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CAZyme Information: MGYG000002394_03029

You are here: Home > Sequence: MGYG000002394_03029

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella rara
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella rara
CAZyme ID MGYG000002394_03029
CAZy Family GT2
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1263 MGYG000002394_50|CGC1 142139.37 5.5294
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002394 3788330 Isolate Russia Europe
Gene Location Start: 2703;  End: 6494  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002394_03029.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT2 252 387 2.2e-19 0.7588235294117647

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam16269 DUF4922 1.96e-110 616 803 1 188
Domain of unknown function (DUF4922). This family consists of uncharacterized proteins around 310 residues in length and is mainly found in various Bacteroides and Parabacteroides species. Several members are annotated as putative glycosyltransferases, but the specific function of this family is still unknown.
TIGR02669 SpoIID_LytB 1.85e-50 926 1258 2 265
SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General]
COG2385 SpoIID 5.84e-40 927 1261 139 393
Peptidoglycan hydrolase (amidase) enhancer domain [Cell wall/membrane/envelope biogenesis].
TIGR02870 spore_II_D 2.17e-36 926 1261 68 338
stage II sporulation protein D. Stage II sporulation protein D (SpoIID) is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIID, along with SpoIIM and SpoIIP, is one of three major proteins involved in engulfment of the forespore by the mother cell. [Cellular processes, Sporulation and germination]
pfam08486 SpoIID 2.99e-29 920 1038 1 100
Stage II sporulation protein. This domain is found in the stage II sporulation protein SpoIID. SpoIID is necessary for membrane migration as well as for some of the earlier steps in engulfment during bacterial endospore formation. The domain is also found in amidase enhancer proteins. Amidases, like SpoIID, are cell wall hydrolases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCS84357.1 0.0 1 1262 1 1252
QNT65264.1 0.0 1 1262 1 1259
ADE82754.1 0.0 1 1262 1 1223
QVJ80566.1 0.0 1 1262 1 1223
QYR11045.1 0.0 5 1262 4 1245

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4RWR_A 6.64e-11 915 1259 51 318
2.1Angstrom Crystal Structure of Stage II Sporulation Protein D from Bacillus anthracis [Bacillus anthracis],4RWR_B 2.1 Angstrom Crystal Structure of Stage II Sporulation Protein D from Bacillus anthracis [Bacillus anthracis]
5I1T_A 1.17e-09 929 1262 63 330
ChainA, Stage II sporulation protein D [Clostridioides difficile 630]
5TXU_A 1.38e-09 929 1262 87 354
ChainA, Stage II sporulation protein D [Clostridioides difficile 630]
5HEA_A 2.16e-07 252 432 8 191
CgTstructure in hexamer [Streptococcus parasanguinis FW213],5HEA_B CgT structure in hexamer [Streptococcus parasanguinis FW213],5HEA_C CgT structure in hexamer [Streptococcus parasanguinis FW213],5HEC_A CgT structure in dimer [Streptococcus parasanguinis FW213],5HEC_B CgT structure in dimer [Streptococcus parasanguinis FW213]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
C0QYX7 4.88e-13 911 1258 88 351
Uncharacterized protein BHWA1_00569 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) OX=565034 GN=BHWA1_00569 PE=1 SV=1
Q02113 7.34e-09 939 1258 425 702
Amidase enhancer OS=Bacillus subtilis (strain 168) OX=224308 GN=lytB PE=1 SV=1
P07372 5.04e-07 885 1258 29 329
Stage II sporulation protein D OS=Bacillus subtilis (strain 168) OX=224308 GN=spoIID PE=4 SV=1
P13251 4.87e-06 906 1258 47 330
Stage II sporulation protein D OS=Bacillus amyloliquefaciens OX=1390 GN=spoIID PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000078 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002394_03029.