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CAZyme Information: MGYG000002400_02304
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Staphylococcus lugdunensis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus lugdunensis | |||||||||||
| CAZyme ID | MGYG000002400_02304 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | putative transglycosylase SceD | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 301760; End: 302467 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam06737 | Transglycosylas | 5.27e-19 | 163 | 235 | 5 | 75 | Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues. |
| cd13925 | RPF | 6.02e-18 | 163 | 232 | 3 | 68 | core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF. |
| pfam01464 | SLT | 2.70e-06 | 163 | 225 | 15 | 76 | Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. |
| cd13399 | Slt35-like | 7.14e-05 | 163 | 199 | 8 | 44 | Slt35-like lytic transglycosylase. Lytic transglycosylase similar to Escherichia coli lytic transglycosylase Slt35 and Pseudomonas aeruginosa Sltb1. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). |
| cd00254 | LT-like | 1.30e-04 | 163 | 199 | 4 | 39 | lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QOR97137.1 | 8.94e-128 | 1 | 235 | 1 | 235 |
| AMG62482.1 | 8.94e-128 | 1 | 235 | 1 | 235 |
| ATG68431.1 | 8.94e-128 | 1 | 235 | 1 | 235 |
| QHP97294.1 | 8.94e-128 | 1 | 235 | 1 | 235 |
| QRF17316.1 | 8.94e-128 | 1 | 235 | 1 | 235 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A6QIT9 | 2.88e-74 | 1 | 235 | 1 | 231 | Probable transglycosylase SceD OS=Staphylococcus aureus (strain Newman) OX=426430 GN=sceD PE=3 SV=1 |
| Q6GEX9 | 2.88e-74 | 1 | 235 | 1 | 231 | Probable transglycosylase SceD OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=sceD PE=3 SV=1 |
| Q2FF31 | 2.88e-74 | 1 | 235 | 1 | 231 | Probable transglycosylase SceD OS=Staphylococcus aureus (strain USA300) OX=367830 GN=sceD PE=3 SV=1 |
| Q2FWF8 | 2.88e-74 | 1 | 235 | 1 | 231 | Probable transglycosylase SceD OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=sceD PE=1 SV=1 |
| Q8NVH0 | 2.88e-74 | 1 | 235 | 1 | 231 | Probable transglycosylase SceD OS=Staphylococcus aureus (strain MW2) OX=196620 GN=sceD PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000446 | 0.997920 | 0.000959 | 0.000238 | 0.000200 | 0.000179 |