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CAZyme Information: MGYG000002406_00128

You are here: Home > Sequence: MGYG000002406_00128

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Corynebacterium pacaense
Lineage Bacteria; Actinobacteriota; Actinomycetia; Mycobacteriales; Mycobacteriaceae; Corynebacterium; Corynebacterium pacaense
CAZyme ID MGYG000002406_00128
CAZy Family CE1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
649 MGYG000002406_12|CGC2 69831.57 4.6552
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002406 3028764 Isolate not provided not provided
Gene Location Start: 94265;  End: 96214  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002406_00128.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE1 108 374 3.5e-56 0.9647577092511013

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG0627 FrmB 2.89e-66 99 380 42 315
S-formylglutathione hydrolase FrmB [Defense mechanisms].
COG5479 Psp3 1.07e-60 400 648 108 375
Uncharacterized conserved protein, contains LGFP repeats [Function unknown].
pfam00756 Esterase 6.69e-51 103 373 1 246
Putative esterase. This family contains Esterase D. However it is not clear if all members of the family have the same function. This family is related to the pfam00135 family.
pfam08310 LGFP 2.02e-18 456 507 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].
pfam08310 LGFP 6.17e-15 561 611 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ALC06930.1 0.0 1 648 1 654
ANE05039.1 0.0 1 648 1 654
BAF55783.1 0.0 1 648 1 657
AGN20388.1 0.0 1 648 1 657
AGN23412.1 0.0 1 648 1 657

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6SX4_AAA 0.0 41 648 1 614
ChainAAA, Protein PS1 [Corynebacterium glutamicum],6SX4_BBB Chain BBB, Protein PS1 [Corynebacterium glutamicum],6SX4_CCC Chain CCC, Protein PS1 [Corynebacterium glutamicum],6SX4_DDD Chain DDD, Protein PS1 [Corynebacterium glutamicum]
6SWZ_AAA 7.72e-148 403 648 7 252
ChainAAA, Protein PS1 [Corynebacterium glutamicum]
1F0N_A 4.94e-47 99 378 11 283
ChainA, ANTIGEN 85B [Mycobacterium tuberculosis],1F0P_A Chain A, ANTIGEN 85-B [Mycobacterium tuberculosis]
1SFR_A 7.96e-46 99 394 12 297
ChainA, Antigen 85-A [Mycobacterium tuberculosis],1SFR_B Chain B, Antigen 85-A [Mycobacterium tuberculosis],1SFR_C Chain C, Antigen 85-A [Mycobacterium tuberculosis]
7MYG_A 3.83e-45 99 366 7 265
ChainA, Diacylglycerol acyltransferase [Mycobacterium tuberculosis],7MYG_B Chain B, Diacylglycerol acyltransferase [Mycobacterium tuberculosis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1D7 0.0 1 648 1 657
Protein PS1 OS=Corynebacterium melassecola OX=41643 GN=csp1 PE=4 SV=1
P0C1D6 0.0 1 648 1 657
Protein PS1 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=csp1 PE=1 SV=1
Q49575 2.67e-50 73 380 24 325
Diacylglycerol acyltransferase/mycolyltransferase Ag85B OS=Mycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600) OX=487521 GN=fbpB PE=3 SV=2
Q06947 2.63e-49 72 380 23 325
Diacylglycerol acyltransferase/mycolyltransferase Ag85B OS=Mycobacterium avium OX=1764 GN=fbpB PE=3 SV=1
Q50397 2.50e-47 72 378 23 323
Diacylglycerol acyltransferase/mycolyltransferase Ag85B OS=Mycobacterium scrofulaceum OX=1783 GN=fbpB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.020199 0.977126 0.000718 0.001362 0.000314 0.000244

TMHMM  Annotations      download full data without filtering help

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