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CAZyme Information: MGYG000002414_00220

You are here: Home > Sequence: MGYG000002414_00220

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus odorifer
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus; Paenibacillus odorifer
CAZyme ID MGYG000002414_00220
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
711 74878.29 6.2882
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002414 6802552 Isolate South Korea Asia
Gene Location Start: 218257;  End: 220392  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002414_00220.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM77 606 706 5.6e-49 0.9805825242718447
PL1 237 403 1e-42 0.8168316831683168

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 2.09e-52 96 407 2 279
Pectate lyase [Carbohydrate transport and metabolism].
pfam18283 CBM77 4.26e-44 603 708 1 108
Carbohydrate binding module 77. This domain is the non-catalytic carbohydrate binding module 77 (CBM77) present in Ruminococcus flavefaciens. CBMs fulfil a critical targeting function in plant cell wall depolymerisation. In CBM77, a cluster of conserved basic residues (Lys1092, Lys1107 and Lys1162) confer calcium-independent recognition of homogalacturonan.
smart00656 Amb_all 2.51e-31 240 401 17 186
Amb_all domain.
pfam00544 Pec_lyase_C 1.83e-19 207 401 1 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AWV31328.1 0.0 1 711 1 711
AIQ71967.1 0.0 1 711 1 717
CQR51569.1 0.0 1 711 1 729
AIQ21570.1 0.0 1 711 1 713
QSF45311.1 0.0 1 711 1 730

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5FU5_A 1.34e-31 602 709 5 112
Thecomplexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition [Ruminococcus flavefaciens]
3VMV_A 9.51e-25 204 401 47 246
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1VBL_A 3.19e-19 236 401 129 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1PCL_A 1.31e-18 199 401 42 276
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
5AMV_A 6.80e-17 240 463 128 381
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B1B6T1 1.08e-27 172 409 54 280
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
Q8GCB2 1.08e-27 172 409 54 280
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
Q65DC2 1.08e-27 172 409 54 280
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
Q5AVN4 1.41e-19 240 405 99 268
Pectate lyase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyA PE=1 SV=1
P04959 6.43e-19 246 427 115 304
Pectate lyase B OS=Dickeya chrysanthemi OX=556 GN=pelB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000386 0.998809 0.000190 0.000222 0.000188 0.000172

TMHMM  Annotations      download full data without filtering help

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