CAZyme Information: MGYG000002414_00820

Basic Information

• Species: Paenibacillus odorifer
• Lineage: Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus; Paenibacillus odorifer
• CAZyme ID: MGYG000002414_00820
• CAZy Family: GH38
• CAZyme Description: Mannosylglycerate hydrolase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
915	MGYG000002414_1|CGC16	102537.8	4.8372

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002414	6802552	Isolate	South Korea	Asia

• Gene Location: Start: 943769; End: 946516 Strand: +

Full Sequence      

MTHATTKTAHIVSHTHWDREWYLPYEKHHVRLVQLVDALLAKLDGDSAFCSFYLDGQTII
LEDYLQVRPENKEKLEKYIRDGRILIGPWYILQDAFLTSGEANVRNMQIGHQDAEKYGKP
SKIGYFPDTFGLVGQTPQLMLQSGITNAFFGRGVKPTGFNNTVSDAGYESSFSELIWEGP
DGSKILGILFANWYSNGNEVPVEEGAARQFWDRKLADAEKYASTGELLFMNGCDHQPLQL
DLPEAIRTAEKLYPEVKFVHSNFPDYLQALDQQLSSGQRELSTVTGELRSQRTDGWGTLV
NTASARVYLKQMNQLGQTLLEKVAEPLASIARLSGQDYPHHLFTYAWKTLMQNHPHDSIC
GCSVDEVHREMVTRFDKSRHVAESIIDDSAKFIADQVETSGFSAYGEDAVPFVVMNTTGW
KRTGTVTIELDAERLYLREGYPLDETARRMLAVDLSGRILVDHTGEELASTVEDLGLSFG
YDLPDDQFRQPYMCRKVRLTFEARNVPALGLCTYAWVQSTTESAQGSSLIEGERSLENAS
LKVVVAEDGSFTLLDKHSGTTYRELGIYENTGDVGNEYMYKQPEGEQALTTKGQPAVIKV
IEDSPFRAAIEIRIDWEIPASADDTLEAEQRALVYYPERKAQRSVNTVVLKLRTVVSLER
EGKGVHIESTINNQAKDHRVRMLFPTDLSTDVHRVDSMFEVATRDNNPAPEWANPSNTQH
QQSFVDVSNGDVGLTVANQGLNEYEVLRDGRNTIAVTLLRSVGELGDWGWFPTPEAQCLG
EYTAQLELIPHSGEGSEQRAFTEAYQFQIPWTVCQTGLHSGKLNSGYTPLVWEGDNMAFS
SMKMNGTSGDLFLRWYNMSAQRTQLQLKVNSPQEYLFKSNILEQSNPALQGATSSVHHLE
VGPSEIVTVGAKLSF

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH38	9	275	1.4e-70	0.9405204460966543

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG0383	AMS1	0.0	6	909	3	939	Alpha-mannosidase [Carbohydrate transport and metabolism].
PRK09819	PRK09819	1.18e-167	5	909	2	872	mannosylglycerate hydrolase.
cd10814	GH38N_AMII_SpGH38_like	6.69e-167	8	292	1	271	N-terminal catalytic domain of SPGH38, a putative alpha-mannosidase of Streptococcus pyogenes, and its prokaryotic homologs; glycoside hydrolase family 38 (GH38). The subfamily is represented by SpGH38 of Streptococcus pyogenes, which has been assigned as a putative alpha-mannosidase, and is encoded by ORF spy1604. SpGH38 appears to exist as an elongated dimer and display alpha-1,3 mannosidase activity. It is active on disaccharides and some aryl glycosides. SpGH38 can also effectively deglycosylate human N-glycans in vitro. A divalent metal ion, such as a zinc ion, is required for its activity. SpGH38 is inhibited by swainsonine. The absence of any secretion signal peptide suggests that SpGH38 may be intracellular.
cd10790	GH38N_AMII_1	7.79e-110	10	291	3	272	N-terminal catalytic domain of putative prokaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38). This mainly bacterial subfamily corresponds to a group of putative class II alpha-mannosidases, including various proteins assigned as alpha-mannosidases, Streptococcus pyogenes (SpGH38) encoded by ORF spy1604. Escherichia coli MngB encoded by the mngB/ybgG gene, and Thermotoga maritime TMM, and similar proteins. SpGH38 targets alpha-1,3 mannosidic linkages. SpGH38 appears to exist as an elongated dimer and display alpha-1,3 mannosidase activity. It is active on disaccharides and some aryl glycosides. SpGH38 can also effectively deglycosylate human N-glycans in vitro. MngB exhibits alpha-mannosidase activity that catalyzes the conversion of 2-O-(6-phospho-alpha-mannosyl)-D-glycerate to mannose-6-phosphate and glycerate in the pathway which enables use of mannosyl-D-glycerate as a sole carbon source. TMM is a homodimeric enzyme that hydrolyzes p-nitrophenyl-alpha-D-mannopyranoside, alpha -1,2-mannobiose, alpha -1,3-mannobiose, alpha -1,4-mannobiose, and alpha -1,6-mannobiose. The GH38 family contains retaining glycosyl hydrolases that employ a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Divalent metal ions, such as zinc or cobalt ions, are suggested to be required for the catalytic activities of typical class II alpha-mannosidases. However, TMM requires the cobalt or cadmium for its activity. The cadmium ion dependency is unique to TMM. Moreover, TMM is inhibited by swainsonine but not 1-deoxymannojirimycin, which is in agreement with the features of cytosolic alpha-mannosidase.
cd10815	GH38N_AMII_EcMngB_like	1.20e-87	8	290	1	268	N-terminal catalytic domain of Escherichia coli alpha-mannosidase MngB and its bacterial homologs; glycoside hydrolase family 38 (GH38). The bacterial subfamily is represented by Escherichia coli alpha-mannosidase MngB, which is encoded by the mngB gene (previously called ybgG). MngB exhibits alpha-mannosidase activity that converts 2-O-(6-phospho-alpha-mannosyl)-D-glycerate to mannose-6-phosphate and glycerate in the pathway which enables use of mannosyl-D-glycerate as a sole carbon source. A divalent metal ion is required for its activity.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AWV31872.1	0.0	1	915	1	915
AIQ72508.1	0.0	1	915	1	915
QQZ63346.1	0.0	7	913	5	915
CQR52782.1	0.0	7	913	8	918
AIQ67033.1	0.0	7	913	5	915

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5KBP_A	3.99e-298	5	890	5	882	Thecrystal structure of an alpha-mannosidase from Enterococcus faecalis V583 [Enterococcus faecalis V583],5KBP_B The crystal structure of an alpha-mannosidase from Enterococcus faecalis V583 [Enterococcus faecalis V583]
3LVT_A	1.63e-289	5	890	5	882	TheCrystal Structure of a Protein in the Glycosyl Hydrolase Family 38 from Enterococcus faecalis to 2.55A [Enterococcus faecalis V583]
2WYH_A	3.99e-275	6	912	25	921	Structureof the Streptococcus pyogenes family GH38 alpha-mannosidase [Streptococcus pyogenes M1 GAS],2WYH_B Structure of the Streptococcus pyogenes family GH38 alpha-mannosidase [Streptococcus pyogenes M1 GAS],2WYI_A Structure of the Streptococcus pyogenes family GH38 alpha-mannosidase complexed with swainsonine [Streptococcus pyogenes M1 GAS],2WYI_B Structure of the Streptococcus pyogenes family GH38 alpha-mannosidase complexed with swainsonine [Streptococcus pyogenes M1 GAS]
5JM0_A	4.13e-09	12	479	307	750	Structureof the S. cerevisiae alpha-mannosidase 1 [Saccharomyces cerevisiae S288C]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q9KER1	4.06e-281	7	909	3	893	Putative mannosylglycerate hydrolase OS=Alkalihalobacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=mngB PE=3 SV=2
P54746	3.01e-113	9	863	7	827	Mannosylglycerate hydrolase OS=Escherichia coli (strain K12) OX=83333 GN=mngB PE=1 SV=2
Q9NTJ4	1.42e-11	8	422	252	634	Alpha-mannosidase 2C1 OS=Homo sapiens OX=9606 GN=MAN2C1 PE=1 SV=1
P22855	2.25e-08	12	479	294	737	Alpha-mannosidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=AMS1 PE=1 SV=2

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000074	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002414_00820.