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CAZyme Information: MGYG000002414_03533

You are here: Home > Sequence: MGYG000002414_03533

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus odorifer
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus; Paenibacillus odorifer
CAZyme ID MGYG000002414_03533
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
478 MGYG000002414_1|CGC76 54490.58 4.8568
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002414 6802552 Isolate South Korea Asia
Gene Location Start: 4009486;  End: 4010922  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002414_03533.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 197 456 1.4e-36 0.7384615384615385

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 9.55e-11 220 353 234 366
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03010 PLN03010 4.23e-07 196 299 140 234
polygalacturonase
pfam00295 Glyco_hydro_28 4.04e-05 227 431 88 243
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 4.37e-05 235 391 149 292
Probable polygalacturonase At3g15720
PLN02793 PLN02793 0.001 273 317 228 265
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AWV34270.1 0.0 1 478 1 478
AIQ74952.1 0.0 1 478 1 478
QYR19562.1 3.01e-271 1 477 1 477
AFC28162.1 2.60e-217 1 475 1 475
AFH60350.1 1.55e-216 1 475 1 475

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000037 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002414_03533.