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CAZyme Information: MGYG000002418_00507

You are here: Home > Sequence: MGYG000002418_00507

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Parabacteroides chinchillae
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides chinchillae
CAZyme ID MGYG000002418_00507
CAZy Family GH2
CAZyme Description Beta-galactosidase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
604 MGYG000002418_1|CGC10 68750.13 6.5097
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002418 3822361 Isolate not provided not provided
Gene Location Start: 580012;  End: 581826  Strand: -

Full Sequence      Download help

MRKNVLIGCA  LVLAMCVQAQ  WKPVGDKIKT  QWAEQINPKN  VLPEYPRPQM  ERADWVNLNG60
EWDYAIKPKG  EVEPALFDGK  ILVPFAVESS  LSGVQKEVGE  NNELWYKRSF  TVPSSWKNKD120
VMINFGAVDW  KADVYVNDIL  IGSHKGGFTP  FSFNITPYLN  GTSNQKLVVR  VWDPSDKGYQ180
PRGKQVSNPE  SIWYTPVTGI  WQTVWLEPVA  TNHIQSIKAI  PNIDTKTMSV  TVATSVECPA240
GIVEVKLMDK  GNVVATAKGV  QGKELRLTVQ  NPTLWSPANP  YLYDMKVSLS  KNGKVIDEVK300
SYTAFRKISA  KRDANGIMRM  QLNNEDLFHF  GPLDQGWWPD  GLYTAPTDEA  LLYDIIKTKD360
WGFNMIRKHV  KVEPARWYYH  CDKEGILVWQ  DMPSGDHGSY  MWEHHVYNGG  KDHERTTESK420
DNYYQEWKEI  MDLCMSNPSV  VVWVPFNEAW  GQFDTEKVVD  WTKSYDPSRL  VNPASGGNHR480
PCGDILDLHN  YPAPDMFLFD  PQRVTVLGEY  GGIGLPIENH  LWWNKRNWGY  VQFKNSDEVT540
AEYVKYADQL  KNLVPRGFSA  AVYTQTTDVE  GEVNGLMTYD  RKVIKINEAA  VKKANEAVIN600
SLSK604

Enzyme Prediction      help

No EC number prediction in MGYG000002418_00507.

CAZyme Signature Domains help

Created with Snap30609012015118121124127130233236239242245348351354357347484GH2
Family Start End Evalue family coverage
GH2 47 484 2.3e-102 0.49601063829787234

CDD Domains      download full data without filtering help

Created with Snap30609012015118121124127130233236239242245348351354357346512LacZ105472PRK10150106471ebgA58206Glyco_hydro_2_N213306Glyco_hydro_2
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3250 LacZ 2.68e-37 46 512 6 477
Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].
PRK10150 PRK10150 1.01e-35 105 472 68 449
beta-D-glucuronidase; Provisional
PRK10340 ebgA 2.66e-22 106 471 113 472
cryptic beta-D-galactosidase subunit alpha; Reviewed
pfam02837 Glyco_hydro_2_N 7.75e-16 58 206 4 165
Glycosyl hydrolases family 2, sugar binding domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. The domain binds the sugar moiety during the sugar-hydrolysis reaction.
pfam00703 Glyco_hydro_2 5.40e-15 213 306 2 106
Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities.

CAZyme Hits      help

Created with Snap3060901201511812112412713023323623924224534835135435731602QUT49304.1|GH21603ABR42251.1|GH21603QRO17549.1|GH21603QCY56905.1|GH21603QUT19566.1|GH2
Hit ID E-Value Query Start Query End Hit Start Hit End
QUT49304.1 0.0 1 602 1 602
ABR42251.1 0.0 1 603 1 603
QRO17549.1 0.0 1 603 1 603
QCY56905.1 0.0 1 603 1 603
QUT19566.1 0.0 1 603 1 603

PDB Hits      download full data without filtering help

Created with Snap306090120151181211241271302332362392422453483513543573196047SF2_A1054713GM8_A514884JKM_A454716XXW_A994676HPD_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
7SF2_A 1.80e-286 19 604 3 588
ChainA, Glycosyl hydrolase family 2, sugar binding domain protein [Bacteroides cellulosilyticus DSM 14838],7SF2_B Chain B, Glycosyl hydrolase family 2, sugar binding domain protein [Bacteroides cellulosilyticus DSM 14838],7SF2_C Chain C, Glycosyl hydrolase family 2, sugar binding domain protein [Bacteroides cellulosilyticus DSM 14838],7SF2_D Chain D, Glycosyl hydrolase family 2, sugar binding domain protein [Bacteroides cellulosilyticus DSM 14838],7SF2_E Chain E, Glycosyl hydrolase family 2, sugar binding domain protein [Bacteroides cellulosilyticus DSM 14838],7SF2_F Chain F, Glycosyl hydrolase family 2, sugar binding domain protein [Bacteroides cellulosilyticus DSM 14838]
3GM8_A 5.18e-28 105 471 69 421
ChainA, Glycoside hydrolase family 2, candidate beta-glycosidase [Phocaeicola vulgatus ATCC 8482]
4JKM_A 7.01e-25 51 488 11 465
CrystalStructure of Clostridium perfringens beta-glucuronidase [Clostridium perfringens str. 13],4JKM_B Crystal Structure of Clostridium perfringens beta-glucuronidase [Clostridium perfringens str. 13],6CXS_A Crystal Structure of Clostridium perfringens beta-glucuronidase bound with a novel, potent inhibitor 4-(8-(piperazin-1-yl)-1,2,3,4-tetrahydro-[1,2,3]triazino[4',5':4,5]thieno[2,3-c]isoquinolin-5-yl)morpholine [Clostridium perfringens str. 13],6CXS_B Crystal Structure of Clostridium perfringens beta-glucuronidase bound with a novel, potent inhibitor 4-(8-(piperazin-1-yl)-1,2,3,4-tetrahydro-[1,2,3]triazino[4',5':4,5]thieno[2,3-c]isoquinolin-5-yl)morpholine [Clostridium perfringens str. 13]
6XXW_A 9.19e-25 45 471 23 444
Structureof beta-D-Glucuronidase for Dictyoglomus thermophilum. [Dictyoglomus thermophilum H-6-12]
6HPD_A 9.63e-24 99 467 89 466
Thestructure of a beta-glucuronidase from glycoside hydrolase family 2 [Formosa agariphila KMM 3901]

Swiss-Prot Hits      download full data without filtering help

Created with Snap30609012015118121124127130233236239242245348351354357354403sp|P77989|BGAL_THEP3106510sp|Q9K9C6|BGAL_ALKHC57463sp|T2KPJ7|PLH8_FORAG99467sp|T2KN75|PLH17_FORAG47476sp|T2KM09|PLH16_FORAG
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P77989 1.09e-28 54 403 4 359
Beta-galactosidase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=lacZ PE=3 SV=2
Q9K9C6 4.24e-24 106 510 124 528
Beta-galactosidase OS=Alkalihalobacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=lacZ PE=3 SV=1
T2KPJ7 3.42e-23 57 463 55 445
Putative beta-glucuronidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_21970 PE=2 SV=1
T2KN75 5.24e-23 99 467 80 457
Beta-glucuronidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22060 PE=1 SV=1
T2KM09 5.15e-22 47 476 41 459
Putative beta-glucuronidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22050 PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000309 0.998494 0.000630 0.000202 0.000174 0.000164

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002418_00507.