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CAZyme Information: MGYG000002423_00638

You are here: Home > Sequence: MGYG000002423_00638

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pantoea septica
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Pantoea; Pantoea septica
CAZyme ID MGYG000002423_00638
CAZy Family GT9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
369 MGYG000002423_2|CGC2 42093.49 7.8158
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002423 4877109 Isolate United States North America
Gene Location Start: 636280;  End: 637389  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002423_00638.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT9 89 307 4.6e-24 0.8488888888888889

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd03789 GT9_LPS_heptosyltransferase 2.07e-32 26 331 1 260
lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
COG0859 RfaF 7.00e-20 28 305 5 287
ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis].
pfam01075 Glyco_transf_9 3.81e-14 126 308 42 222
Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QDY43466.1 5.29e-219 1 365 1 365
QFS62331.1 2.38e-216 1 365 1 365
QZY94795.1 3.38e-216 1 365 1 365
QZY90276.1 3.38e-216 1 365 1 365
AIX49719.1 2.41e-208 1 368 1 368

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.990207 0.009606 0.000145 0.000017 0.000010 0.000029

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002423_00638.