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CAZyme Information: MGYG000002436_02175
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pigmentiphaga sp002188635 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Pigmentiphaga; Pigmentiphaga sp002188635 | |||||||||||
| CAZyme ID | MGYG000002436_02175 | |||||||||||
| CAZy Family | AA3 | |||||||||||
| CAZyme Description | Oxygen-dependent choline dehydrogenase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 327503; End: 328411 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 9 | 211 | 7.3e-42 | 0.3732394366197183 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| TIGR03970 | Rv0697 | 5.39e-40 | 11 | 211 | 2 | 201 | dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. |
| COG2303 | BetA | 1.10e-38 | 5 | 220 | 3 | 218 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| PRK02106 | PRK02106 | 7.91e-38 | 5 | 206 | 1 | 201 | choline dehydrogenase; Validated |
| pfam01695 | IstB_IS21 | 1.15e-29 | 210 | 284 | 164 | 238 | IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function. |
| PRK09183 | PRK09183 | 7.60e-21 | 208 | 279 | 173 | 245 | transposase/IS protein; Provisional |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AYV88989.1 | 2.22e-30 | 5 | 186 | 107 | 287 |
| AYV89171.1 | 8.87e-29 | 7 | 185 | 109 | 286 |
| ALC49422.1 | 1.89e-28 | 7 | 255 | 56 | 296 |
| ALC48846.1 | 1.91e-28 | 3 | 255 | 56 | 300 |
| ALC45304.1 | 8.61e-28 | 7 | 211 | 62 | 266 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6F97_A | 4.09e-41 | 6 | 214 | 2 | 218 | Crystalstructure of the V465T mutant of 5-(Hydroxymethyl)furfural Oxidase (HMFO) [Methylovorus sp. MP688],6F97_B Crystal structure of the V465T mutant of 5-(Hydroxymethyl)furfural Oxidase (HMFO) [Methylovorus sp. MP688] |
| 4UDP_A | 4.09e-41 | 6 | 214 | 2 | 218 | Crystalstructure of 5-hydroxymethylfurfural oxidase (HMFO) in the oxidized state [Methylovorus sp. MP688],4UDP_B Crystal structure of 5-hydroxymethylfurfural oxidase (HMFO) in the oxidized state [Methylovorus sp. MP688],4UDQ_A Crystal structure of 5-hydroxymethylfurfural oxidase (HMFO) in the reduced state [Methylovorus sp. MP688],4UDQ_B Crystal structure of 5-hydroxymethylfurfural oxidase (HMFO) in the reduced state [Methylovorus sp. MP688] |
| 4UDR_A | 4.09e-41 | 6 | 214 | 2 | 218 | Crystalstructure of the H467A mutant of 5-hydroxymethylfurfural oxidase (HMFO) [Methylovorus sp. MP688],4UDR_B Crystal structure of the H467A mutant of 5-hydroxymethylfurfural oxidase (HMFO) [Methylovorus sp. MP688] |
| 4HA6_A | 5.69e-23 | 11 | 217 | 3 | 206 | Crystalstructure of pyridoxine 4-oxidase - pyridoxamine complex [Mesorhizobium loti] |
| 3T37_A | 1.12e-22 | 11 | 217 | 19 | 222 | Crystalstructure of pyridoxine 4-oxidase from Mesorbium loti [Mesorhizobium loti] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| E4QP00 | 2.24e-40 | 6 | 214 | 2 | 218 | 5-(hydroxymethyl)furfural oxidase OS=Methylovorus sp. (strain MP688) OX=887061 GN=MPQ_0130 PE=1 SV=1 |
| Q47944 | 3.50e-34 | 10 | 211 | 5 | 201 | L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans OX=442 PE=3 SV=1 |
| Q7MF12 | 2.06e-32 | 10 | 211 | 5 | 204 | Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=betA PE=3 SV=1 |
| Q8D3K2 | 2.06e-32 | 10 | 211 | 5 | 204 | Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=betA PE=3 SV=1 |
| A7N2P9 | 4.13e-32 | 10 | 211 | 5 | 204 | Oxygen-dependent choline dehydrogenase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=1224742 GN=betA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000031 | 0.000011 | 0.000001 | 0.000000 | 0.000000 | 0.000000 |