CAZyme Information: MGYG000002438_01901

Basic Information

• Species: Parabacteroides distasonis
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides distasonis
• CAZyme ID: MGYG000002438_01901
• CAZy Family: GT19
• CAZyme Description: Lipid-A-disaccharide synthase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
377		42878.84	9.4734

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002438	5030699	Isolate	South Korea	Asia

• Gene Location: Start: 2285019; End: 2286152 Strand: -

Full Sequence      

MKYYLIAGEASGDLHASNLMAALKENDPKAEFRFLGGDLMRAVGGTLVKHYREMAFMGFI
PVLLNLRTILNNMKTCQEDIRRYQPDVVILIDYPGFNLKIAKYVKTQLGLPVYYYISPKI
WAWKQYRIRDFRRYVDRMFCILPFETEFFRKLNYSVDYVGNPSVDSVAYYKEHQAIPKDT
FIKEEGLANKPILALLSGSRKQEIKDNLPTMLKVASAYPDYQPVIAGAPGIDPAYYQEYI
GSYPAKIVFGKTYPLLQHSAAALVTSGTATLETALFRVPQVVCYYVVAGQLASFIFKHFF
HTKYISLVNLIGGREIVQELFGARFSESQIQDELGRILQDPAYRKRMLDGYDKIIHTLGM
PGASKRTARLIVESLGS

Enzyme Prediction     

No EC number prediction in MGYG000002438_01901.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GT19	4	358	1.7e-111	0.9887005649717514

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
PRK00025	lpxB	1.65e-108	1	377	2	377	lipid-A-disaccharide synthase; Reviewed
COG0763	LpxB	3.12e-95	1	373	2	377	Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis].
pfam02684	LpxB	1.98e-77	4	372	2	374	Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide.
TIGR00215	lpxB	3.30e-63	5	373	10	384	lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK14089	PRK14089	5.97e-44	1	371	2	344	lipid-A-disaccharide synthase.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ABR44355.1	1.23e-276	1	377	1	377
QRO15504.1	1.23e-276	1	377	1	377
QCY57761.1	1.23e-276	1	377	1	377
QUT21416.1	1.23e-276	1	377	1	377
QUT93670.1	1.23e-276	1	377	1	377

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5W8N_A	9.20e-35	5	373	11	379	LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)]
5W8S_A	9.20e-35	5	373	11	379	LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q1D393	2.27e-67	2	375	6	378	Lipid-A-disaccharide synthase OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=lpxB PE=3 SV=1
Q2LVL8	1.41e-61	5	368	8	371	Lipid-A-disaccharide synthase OS=Syntrophus aciditrophicus (strain SB) OX=56780 GN=lpxB PE=3 SV=1
Q39T49	4.04e-61	2	376	8	381	Lipid-A-disaccharide synthase OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=lpxB PE=3 SV=1
Q74AT9	1.87e-58	2	376	8	381	Lipid-A-disaccharide synthase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=lpxB PE=3 SV=1
B8JE78	1.08e-56	5	372	13	379	Lipid-A-disaccharide synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) OX=455488 GN=lpxB PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000027	0.000008	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002438_01901.