CAZyme Information: MGYG000002438_02252

Basic Information

• Species: Parabacteroides distasonis
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides distasonis
• CAZyme ID: MGYG000002438_02252
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
999	MGYG000002438_1|CGC40	110826.19	8.9117

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002438	5030699	Isolate	South Korea	Asia

• Gene Location: Start: 2689409; End: 2692408 Strand: +

Full Sequence      

MRQIGILLLCCISLLSSGAQTVPNLYRAVDQEKMNHWVDSVFDAMSYDERIGQLFMVIAN
PKSDNRNMQRLMRYVNDIKIGGILFHKGDPVTQAEVTNRLQKASRIPMLVSLDGEWGLSM
RLSGTTRFPKNMMLGAIEDNALIEEYGKEVGRQCREMGIHINFAPDMDVNSNVDNPVIGL
RSFGENPEAVAEKGIAYARGLESTGILSVSKHFPGHGDTSEDSHETLPVVRHNRARLDSV
ELLPFKRYIYDGFAGIMTGHLYVPALDKSHKPASFSKAVVTDLLQKELGFQGLCFTDALA
MKGASTKKTDNPSVKALLAGNDILLAPAAPINDFTAVKEAIEEGVLDLEAIEAKCLKILR
YKYIAGLNAYKPVETKGLSKRLNSPHAAWMAAKLNSEAITVLKNEDTILPLKQLNKKKIA
ALSIGDGVGNEFQKMLGEYDSIACFSIGRRSTAAQVQQVYNKLQKYDVIICGVHTIRIPE
SLALRQLAAKKELVYAFFTLPYACKEYKKSIEKAKAVVLAYEGTPLAQEYAAQVIFGGIA
AKGKLPVSIPGLYYAGTGVFTEKTRLGYHQPEEVGANPDRLDVIESIVKEGLDEKAYPGC
QVLVAKDGMIIYNKSFGYFDYESRQPVTEASVYDLASASKAAGTLLAVMKAYDEKKFTLN
NKISDFIPELKESNKKDLSIKELLYHQSGVTPTINFYLDAIDKDSYKGSLYSSAKNATHP
VRFDAKTYVRNDFKYLPDIVSDTRKPGFTTEVARNFYVSDSFKDTILQDIKKSRLGTRGR
YVYSCVNFIMLKMMVENLMKSPMDQLLRDDFYSGLGAWHTTYNPLKRMDTLQIVPTEQDG
FVRRQLLRGYVHDEAAAFQGGVSGNAGLFSNANDLAKVLQLMLNQGTYGGERYLSLETSR
LFTQSKSPTCRRGLGFDKPVIGNPKASPCGALAPASVYGHTGFTGTCFWVDPDNQLIYIF
LSNRVNPSRANNKLGSLDIRTRIQDAIYKAIDRKSQKDS

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	101	325	5.1e-58	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	3.38e-73	45	430	1	368	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	6.15e-72	48	360	3	315	Glycosyl hydrolase family 3 N terminal domain.
PRK03642	PRK03642	2.45e-59	569	991	28	431	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	1.04e-41	584	967	1	311	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	2.35e-38	569	973	26	372	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUT21701.1	0.0	1	999	1	999
QUT55768.1	0.0	1	999	1	999
QCY58561.1	0.0	1	999	1	999
BBK92319.1	0.0	1	999	1	999
QUT93956.1	0.0	1	999	1	999

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6K5J_A	2.35e-64	44	549	10	531	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3BMX_A	1.90e-62	27	568	31	632	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	5.47e-62	27	568	5	606	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	9.98e-62	27	568	35	636	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3SQL_A	1.18e-52	62	362	44	346	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	1.04e-61	27	568	31	632	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	6.20e-49	71	412	55	426	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
P77619	9.81e-47	571	994	30	434	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	6.10e-46	571	994	30	434	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
B5F0K5	1.30e-41	571	975	30	406	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella agona (strain SL483) OX=454166 GN=yfeW PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000810	0.998091	0.000498	0.000198	0.000182	0.000176

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002438_02252.