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CAZyme Information: MGYG000002458_00088

You are here: Home > Sequence: MGYG000002458_00088

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia aleksiciae
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia aleksiciae
CAZyme ID MGYG000002458_00088
CAZy Family PL2
CAZyme Description Pectate disaccharide-lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
555 MGYG000002458_1|CGC2 63749.86 6.4696
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002458 4525402 Isolate Finland Europe
Gene Location Start: 94348;  End: 96015  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.9

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL2 17 549 2.6e-273 0.99812734082397

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam06917 Pectate_lyase_2 5.72e-116 10 540 5 533
Periplasmic pectate lyase. This family consists of several Enterobacterial periplasmic pectate lyase proteins (EC:4.2.2.2). A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QKJ05359.1 0.0 1 555 1 555
QKJ09101.1 0.0 1 555 1 555
QDW35507.1 0.0 1 555 1 555
AVX38027.1 0.0 1 555 1 555
QKJ13663.1 0.0 1 555 1 555

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5A29_A 6.32e-149 18 549 33 566
Family2 Pectate Lyase from Vibrio vulnificus [Vibrio vulnificus YJ016]
6OJK_A 6.88e-119 18 539 29 547
Structureof YePL2A K291W in Complex with Tetragalacturonic Acid [Yersinia enterocolitica]
2V8J_A 5.68e-117 18 539 2 520
Structureof a Family 2 Pectate Lyase in Complex with a Transition Metal [Yersinia enterocolitica]
2V8I_A 7.21e-117 18 539 3 521
Structureof a Family 2 Pectate Lyase in a Native Form [Yersinia enterocolitica],2V8K_A Structure of a Family 2 Pectate Lyase in Complex with Trigalacturonic Acid [Yersinia enterocolitica]
6OJL_A 2.38e-116 18 539 29 547
Structureof YePL2A R194K in Complex with Pentagalacturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q05526 1.19e-267 17 553 18 541
Pectate disaccharide-lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelW PE=2 SV=3
P14005 1.48e-116 18 539 25 543
Periplasmic pectate lyase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pelB PE=3 SV=1
P11278 2.88e-114 7 533 18 541
Periplasmic pectate lyase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=pelY PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000055 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002458_00088.