dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000002463_01126

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Basic Information help

Species

Pseudomonas aeruginosa

Lineage

Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa

CAZyme ID

MGYG000002463_01126

CAZy Family

AA10

CAZyme Description

Chitin-binding protein CbpD

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
389		41945.97	6.8119

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002463	6750396	Isolate	Brazil	South America

Gene Location

Start: 147015; End: 148184 Strand: +

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000002463_01126.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
AA10	26	207	1e-52	0.9887640449438202
CBM73	340	387	1.7e-20	0.8703703703703703

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3397	COG3397	2.59e-125	21	309	25	308	Predicted carbohydrate-binding protein, contains CBM5 and CBM33 domains [General function prediction only].
pfam03067	LPMO_10	2.53e-74	26	207	1	186	Lytic polysaccharide mono-oxygenase, cellulose-degrading. This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.
cd21177	LPMO_AA10	1.52e-71	26	207	1	179	lytic polysaccharide monooxygenase (LPMO) auxiliary activity family 10 (AA10). AA10 proteins are copper-dependent lytic polysaccharide monooxygenases (LPMOs), which may act on chitin or cellulose. The family used to be called CBM33. Activities in this family include lytic cellulose monooxygenase (C1-hydroxylating) (EC 1.14.99.54), lytic cellulose monooxygenase (C4-dehydrogenating) (EC 1.14.99.56), lytic chitin monooxygenase (EC 1.14.99.53), and lytic xylan monooxygenase/xylan oxidase (glycosidic bond-cleaving) (EC 1.14.99.-). Also included are viral chitin-binding glycoproteins such as fusolin and spheroidin-like proteins.
PRK13211	PRK13211	8.00e-60	21	389	19	477	N-acetylglucosamine-binding protein GbpA.
pfam18416	GbpA_2	9.34e-32	217	315	1	102	N-acetylglucosamine binding protein domain 2. This domain can be found in N-acetylglucosamine binding protein (GbpA) from Vibrio cholerae, a bacterial pathogen that colonizes the chitinous exoskeleton of zooplankton as well as the human gastrointestinal tract. GbpA binds to GlcNAc oligosaccharides. Structural comparison show that there are distant structural similarities between domain 2 of GbpA and the beta-domain of the flagellin protein p5. It is suggested that this domain interacts with the bacterial surface, and functions to project an alginate binding domain of the protein from the cell surface.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AGI83134.1	2.58e-300	1	389	1	389
QKR57721.1	2.58e-300	1	389	1	389
QKL15069.1	2.58e-300	1	389	1	389
AZN45197.1	2.58e-300	1	389	1	389
ALS15078.1	2.58e-300	1	389	1	389

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6IF7_A	1.20e-68	26	210	1	183	CrystalStructure of AA10 Lytic Polysaccharide Monooxygenase from Tectaria macrodonta [Tectaria macrodonta]
5FJQ_A	8.39e-40	26	209	1	179	Structuraland functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in Cellvibrio japonicus [Cellvibrio japonicus],5FJQ_B Structural and functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in Cellvibrio japonicus [Cellvibrio japonicus],5FJQ_C Structural and functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in Cellvibrio japonicus [Cellvibrio japonicus]
4OY7_A	7.17e-31	26	211	1	195	Structureof cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_B Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_C Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_D Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_E Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_F Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_G Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_H Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)]
5OPF_A	2.52e-24	26	209	1	193	Structureof LPMO10B from from Micromonospora aurantiaca [Micromonospora aurantiaca ATCC 27029]
6NDQ_A	6.15e-23	26	210	1	186	Crystalstructure of a LPMO from Kitasatospora papulosa [[Kitasatospora] papulosa],6NDQ_B Crystal structure of a LPMO from Kitasatospora papulosa [[Kitasatospora] papulosa]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q02I11	7.33e-301	1	389	1	389	Chitin-binding protein CbpD OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=cpbD PE=1 SV=1
Q9I589	1.22e-299	1	389	1	389	Chitin-binding protein CbpD OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=cbpD PE=1 SV=1
Q8EHY2	1.73e-38	14	389	11	475	GlcNAc-binding protein A OS=Shewanella oneidensis (strain MR-1) OX=211586 GN=gbpA PE=3 SV=2
A7N3J0	1.02e-31	85	387	79	484	GlcNAc-binding protein A OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=1224742 GN=gbpA PE=3 SV=1
Q6LKG5	1.03e-31	10	389	10	487	GlcNAc-binding protein A OS=Photobacterium profundum (strain SS9) OX=298386 GN=gbpA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000203	0.999151	0.000161	0.000172	0.000144	0.000142

TMHMM Annotations help

There is no transmembrane helices in MGYG000002463_01126.