CAZyme Information: MGYG000002465_00402

Basic Information

• Species: Yersinia massiliensis
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia massiliensis
• CAZyme ID: MGYG000002465_00402
• CAZy Family: PL17
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
688	MGYG000002465_1|CGC8	78326.4	5.671

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002465	4872451	Isolate	Finland	Europe

• Gene Location: Start: 476815; End: 478881 Strand: +

Full Sequence      

MKQFTDQQMAEIRQRVVQRAENTVQRQGDITQQYGNTVQPSGIIATLIAENQVVLDSETR
VPTTGIATWNHYYYCPDHGVKLVWDRHSPTQHRCPIDDQLFSGEPYDGAWWRALNGLNAK
ACNQLGLLWQLTGEIRYFNKVRDILINYARYYPDYEVHGGIPYNGPGKANAQTLCEANCL
LDFALGYDFIAESLSQEQRDCIAGRLLREGADFLMQHRTRQLHNHEVKISSAIAVIGLIL
EEEHYVEFAVNAEYGLRYQLEHGLFSEGLWFEGSVHYHFYALQGFWSFEKLAAGSRYSLL
ALPYYRDMLSFPLKLLMPDGTFPRINDCTAGQEQLTHAHLYEFAFKIYGNDEYAAALHHI
YRQQPRFNLDALLYGVEELPSPRVNIIPTDTLHAPDCGLTILRQPQSGRALLIKHSPYGG
EHDHYDRLNLILFEQGQEILPDLGTTGYGAQLHYGYYKNSATHNTLSVNQANQPPAVPVI
HNWYQSAKFSWLDTEVDWGKKAPELDSHTRVQWDCDAYRDIKFRRRILWLEDAIIDISSI
VNPHQQACDWTLHIDGMAMDAAGESISFSENGPMQYLHQVTTKPLNGVLQCDYQTAANPL
PIWLAADATLFQGLAPANPSVRDISYLILRSHQPESLITSVFDMNNPQPLTNVQVDNDGE
ILSIKLTRQQQVMQVKIPLVDCGIPLFI

Enzyme Prediction     

No EC number prediction in MGYG000002465_00402.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL17	397	531	3.5e-74	0.9925925925925926

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam07940	Hepar_II_III	5.59e-12	388	566	3	179	Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVX39687.1	0.0	1	688	1	688
QKJ10462.1	0.0	1	688	1	688
ATM88491.1	0.0	1	688	1	688
AYD42751.1	0.0	1	687	1	681
AIN19189.1	0.0	1	687	1	681

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
4NEI_A	4.45e-23	118	560	92	557	Alg17cPL17 Family Alginate Lyase [Saccharophagus degradans 2-40],4NEI_B Alg17c PL17 Family Alginate Lyase [Saccharophagus degradans 2-40]
4OJZ_A	4.17e-22	118	560	92	557	CrystalStructure of Alg17c Mutant Y258A Complexed with Alginate Trisaccharide [Saccharophagus degradans 2-40],4OJZ_B Crystal Structure of Alg17c Mutant Y258A Complexed with Alginate Trisaccharide [Saccharophagus degradans 2-40],4OK2_A Crystal Structure of Alg17c Mutant Y258A [Saccharophagus degradans 2-40],4OK2_B Crystal Structure of Alg17c Mutant Y258A [Saccharophagus degradans 2-40]
4OK4_A	9.65e-22	118	560	92	557	CrystalStructure of Alg17c Mutant H202L [Saccharophagus degradans 2-40],4OK4_B Crystal Structure of Alg17c Mutant H202L [Saccharophagus degradans 2-40]
7BJT_A	5.98e-19	106	472	78	489	ChainA, Alginate lyase, family PL17 [Zobellia galactanivorans],7BJT_B Chain B, Alginate lyase, family PL17 [Zobellia galactanivorans]
7BM6_A	5.51e-18	106	472	78	489	ChainA, Alginate lyase, family PL17 [Zobellia galactanivorans],7BM6_B Chain B, Alginate lyase, family PL17 [Zobellia galactanivorans]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q21FJ0	2.44e-22	118	560	92	557	Exo-oligoalginate lyase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=alg17C PE=1 SV=1
B2FSW8	4.61e-19	118	574	99	576	Alginate lyase OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=Smlt2602 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000021	0.000002	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002465_00402.