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CAZyme Information: MGYG000002465_01808

You are here: Home > Sequence: MGYG000002465_01808

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia massiliensis
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia massiliensis
CAZyme ID MGYG000002465_01808
CAZy Family PL1
CAZyme Description Pectate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
452 MGYG000002465_9|CGC3 49386.27 5.891
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002465 4872451 Isolate Finland Europe
Gene Location Start: 77097;  End: 78455  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002465_01808.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 157 365 3.8e-91 0.9859154929577465

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 3.14e-56 14 447 1 344
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 2.97e-50 168 365 14 185
Amb_all domain.
pfam00544 Pec_lyase_C 2.81e-29 138 364 5 209
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ATM85622.1 0.0 1 452 14 465
AVX38462.1 0.0 1 452 14 465
QKJ13240.1 0.0 1 452 1 452
QXT42887.1 7.30e-280 1 452 1 454
AYM89518.1 1.95e-277 1 452 38 491

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1VBL_A 5.33e-111 33 447 1 415
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1BN8_A 1.75e-107 28 448 17 420
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
2BSP_A 4.93e-107 28 448 17 420
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
5AMV_A 1.44e-106 34 448 2 399
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
2NZM_A 1.15e-105 34 448 2 399
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P39116 9.56e-107 28 448 17 420
Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1
Q60140 1.75e-62 13 445 9 377
Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1
Q59671 2.32e-58 13 447 10 380
Pectate lyase OS=Pseudomonas fluorescens OX=294 GN=pel PE=3 SV=1
Q56806 3.21e-57 13 447 6 377
Pectate lyase OS=Xanthomonas campestris pv. malvacearum OX=86040 PE=3 SV=1
P72242 5.33e-55 45 445 39 377
Pectate lyase OS=Pseudomonas amygdali pv. lachrymans OX=53707 GN=pelP PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.030330 0.964286 0.000560 0.003686 0.000596 0.000509

TMHMM  Annotations      download full data without filtering help

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