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CAZyme Information: MGYG000002466_00244

You are here: Home > Sequence: MGYG000002466_00244

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia frederiksenii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia frederiksenii
CAZyme ID MGYG000002466_00244
CAZy Family PL2
CAZyme Description Pectate disaccharide-lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
577 MGYG000002466_1|CGC4 66733.73 6.9313
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002466 4803605 Isolate Finland Europe
Gene Location Start: 269469;  End: 271202  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.9

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL2 39 571 2.7e-277 0.99812734082397

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam06917 Pectate_lyase_2 2.50e-119 40 562 13 533
Periplasmic pectate lyase. This family consists of several Enterobacterial periplasmic pectate lyase proteins (EC:4.2.2.2). A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ATM96041.1 0.0 23 577 1 555
VTP77445.1 0.0 21 577 1 557
CCQ40771.1 0.0 23 577 1 555
AJJ23037.1 0.0 23 577 1 555
QKJ09101.1 0.0 23 577 1 555

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5A29_A 3.23e-152 33 573 29 568
Family2 Pectate Lyase from Vibrio vulnificus [Vibrio vulnificus YJ016]
6OJK_A 6.34e-123 40 561 29 547
Structureof YePL2A K291W in Complex with Tetragalacturonic Acid [Yersinia enterocolitica]
2V8J_A 7.29e-121 40 561 2 520
Structureof a Family 2 Pectate Lyase in Complex with a Transition Metal [Yersinia enterocolitica]
2V8I_A 9.29e-121 40 561 3 521
Structureof a Family 2 Pectate Lyase in a Native Form [Yersinia enterocolitica],2V8K_A Structure of a Family 2 Pectate Lyase in Complex with Trigalacturonic Acid [Yersinia enterocolitica]
6OJL_A 2.20e-120 40 561 29 547
Structureof YePL2A R194K in Complex with Pentagalacturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q05526 2.91e-269 39 575 18 541
Pectate disaccharide-lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelW PE=2 SV=3
P11278 6.74e-119 29 562 18 549
Periplasmic pectate lyase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=pelY PE=3 SV=2
P14005 1.19e-118 40 576 25 557
Periplasmic pectate lyase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pelB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000052 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002466_00244.