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CAZyme Information: MGYG000002466_01410

You are here: Home > Sequence: MGYG000002466_01410

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia frederiksenii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia frederiksenii
CAZyme ID MGYG000002466_01410
CAZy Family CBM32
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
159 MGYG000002466_4|CGC2 17204.58 7.1652
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002466 4803605 Isolate Finland Europe
Gene Location Start: 175123;  End: 175602  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002466_01410.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM32 28 145 2.5e-21 0.9274193548387096

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00754 F5_F8_type_C 2.54e-17 26 145 1 127
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
cd00057 FA58C 1.91e-07 27 129 14 126
Substituted updates: Jan 31, 2002
pfam17132 Glyco_hydro_106 1.06e-05 26 129 175 282
alpha-L-rhamnosidase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ATM94021.1 3.82e-110 1 159 1 159
QAX80876.1 4.12e-105 1 159 1 159
AHM71405.2 1.68e-104 1 159 1 159
VTP84873.1 3.25e-102 1 159 1 159
AJI82176.1 3.25e-102 1 159 1 159

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2JD9_A 7.82e-90 20 159 6 145
Structureof a pectin binding carbohydrate binding module determined in an orthorhombic crystal form. [Yersinia enterocolitica],2JDA_A Structure of a pectin binding carbohydrate binding module determined in an monoclinic crystal form. [Yersinia enterocolitica],2JDA_B Structure of a pectin binding carbohydrate binding module determined in an monoclinic crystal form. [Yersinia enterocolitica]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001879 0.721922 0.275100 0.000515 0.000300 0.000270

TMHMM  Annotations      download full data without filtering help

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