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CAZyme Information: MGYG000002466_04268
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Yersinia frederiksenii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia frederiksenii | |||||||||||
| CAZyme ID | MGYG000002466_04268 | |||||||||||
| CAZy Family | GT4 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 26548; End: 28998 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd11579 | Glyco_tran_WbsX | 0.0 | 216 | 559 | 1 | 347 | Glycosyl hydrolase family 99-like domain of WbsX-like glycosyltransferases. Members of this domain family are found in proteins within O-antigen biosynthesis clusters in Gram negative bacteria, where they may function as glycosyl hydrolases and typically co-occur with glycosyltransferase domains. They bear resemblance to GH71 and the GH99 family of alpha-1,2-mannosidases and may share a similar cataltyic site and mechanism. The O-antigens are essential lipopolysaccharides in gram-negative bacteria's outer membrane and have been linked to pathogenicity. |
| pfam14307 | Glyco_tran_WbsX | 0.0 | 219 | 554 | 2 | 312 | Glycosyltransferase WbsX. Members of this family are found in within O-antigen biosynthesis clusters in Gram negative bacteria, where they are predicted to function as glycosyltransferases. |
| COG3754 | RgpF | 2.38e-41 | 213 | 683 | 87 | 514 | Lipopolysaccharide biosynthesis protein [Cell wall/membrane/envelope biogenesis]. |
| pfam05045 | RgpF | 1.13e-32 | 555 | 805 | 242 | 498 | Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors. |
| cd11573 | GH99_GH71_like | 1.62e-24 | 265 | 570 | 2 | 279 | Glycoside hydrolase families 71, 99, and related domains. This superfamily of glycoside hydrolases contains families GH71 and GH99 (following the CAZY nomenclature), as well as other members with undefined function and specificity. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| BCG66087.1 | 6.55e-195 | 201 | 811 | 706 | 1317 |
| QYF41686.1 | 6.59e-167 | 201 | 815 | 76 | 673 |
| AWB76961.1 | 1.77e-145 | 199 | 570 | 104 | 473 |
| CCH11119.1 | 1.87e-144 | 199 | 570 | 104 | 473 |
| QNG85928.1 | 1.87e-144 | 199 | 570 | 104 | 473 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| B0RVK2 | 3.32e-168 | 212 | 816 | 86 | 674 | Uncharacterized protein WxcX OS=Xanthomonas campestris pv. campestris (strain B100) OX=509169 GN=wxcX PE=4 SV=1 |
| P0C7J1 | 2.62e-167 | 212 | 816 | 86 | 674 | Uncharacterized protein WxcX OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=wxcX PE=4 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000045 | 0.000016 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |