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CAZyme Information: MGYG000002467_00753
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Yersinia frederiksenii_C | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia frederiksenii_C | |||||||||||
| CAZyme ID | MGYG000002467_00753 | |||||||||||
| CAZy Family | PL22 | |||||||||||
| CAZyme Description | Oligogalacturonate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 815662; End: 816828 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL22 | 215 | 383 | 2e-82 | 0.6339622641509434 |
| PL22 | 32 | 147 | 2.1e-31 | 0.42641509433962266 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam14583 | Pectate_lyase22 | 0.0 | 1 | 386 | 1 | 386 | Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers. |
| COG0823 | TolB | 5.03e-74 | 1 | 387 | 58 | 425 | Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport]. |
| PRK04792 | tolB | 4.08e-08 | 245 | 382 | 225 | 337 | Tol-Pal system protein TolB. |
| PRK05137 | tolB | 4.71e-08 | 197 | 378 | 162 | 317 | Tol-Pal system protein TolB. |
| PRK00178 | tolB | 2.74e-07 | 245 | 383 | 206 | 319 | Tol-Pal system protein TolB. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ATM96050.1 | 7.42e-304 | 1 | 388 | 1 | 388 |
| QKJ16275.1 | 4.29e-303 | 1 | 388 | 1 | 388 |
| AJJ34757.1 | 1.23e-302 | 1 | 388 | 1 | 388 |
| AIN18523.1 | 1.23e-302 | 1 | 388 | 1 | 388 |
| AJI85542.1 | 1.23e-302 | 1 | 388 | 1 | 388 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3PE7_A | 5.88e-300 | 1 | 388 | 1 | 388 | Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081] |
| 3C5M_A | 1.92e-206 | 2 | 385 | 2 | 385 | Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q59418 | 8.87e-256 | 1 | 387 | 1 | 387 | Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2 |
| P21258 | 2.54e-255 | 1 | 388 | 1 | 388 | Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000040 | 0.000010 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |