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CAZyme Information: MGYG000002467_01434
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Yersinia frederiksenii_C | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia frederiksenii_C | |||||||||||
| CAZyme ID | MGYG000002467_01434 | |||||||||||
| CAZy Family | CE8 | |||||||||||
| CAZyme Description | Pectinesterase A | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 426211; End: 427293 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| CE8 | 31 | 349 | 2.7e-81 | 0.9618055555555556 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG4677 | PemB | 5.34e-127 | 1 | 357 | 46 | 405 | Pectin methylesterase and related acyl-CoA thioesterases [Carbohydrate transport and metabolism, Lipid transport and metabolism]. |
| pfam01095 | Pectinesterase | 2.46e-40 | 28 | 349 | 1 | 290 | Pectinesterase. |
| PLN02682 | PLN02682 | 1.26e-37 | 27 | 358 | 69 | 367 | pectinesterase family protein |
| PRK10531 | PRK10531 | 2.97e-35 | 21 | 332 | 74 | 422 | putative acyl-CoA thioester hydrolase. |
| PLN02990 | PLN02990 | 3.18e-32 | 18 | 304 | 252 | 507 | Probable pectinesterase/pectinesterase inhibitor |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ATM97302.1 | 6.56e-252 | 1 | 360 | 1 | 360 |
| QGR67766.1 | 3.54e-238 | 1 | 360 | 1 | 361 |
| VDZ59577.1 | 3.54e-238 | 1 | 360 | 1 | 361 |
| QGR72782.1 | 3.54e-238 | 1 | 360 | 1 | 361 |
| AJJ19106.1 | 5.03e-238 | 1 | 360 | 1 | 361 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3UW0_A | 4.62e-236 | 1 | 360 | 4 | 364 | Pectinmethylesterase from Yersinia enterocolitica [Yersinia enterocolitica subsp. enterocolitica 8081] |
| 2NSP_A | 1.86e-136 | 27 | 357 | 4 | 337 | ChainA, Pectinesterase A [Dickeya dadantii 3937],2NSP_B Chain B, Pectinesterase A [Dickeya dadantii 3937],2NST_A Chain A, Pectinesterase A [Dickeya dadantii 3937],2NST_B Chain B, Pectinesterase A [Dickeya dadantii 3937],2NT6_A Chain A, Pectinesterase A [Dickeya dadantii 3937],2NT6_B Chain B, Pectinesterase A [Dickeya dadantii 3937],2NT9_A Chain A, Pectinesterase A [Dickeya dadantii 3937],2NT9_B Chain B, Pectinesterase A [Dickeya dadantii 3937] |
| 1QJV_A | 1.44e-128 | 27 | 357 | 4 | 337 | ChainA, PECTIN METHYLESTERASE [Dickeya chrysanthemi],1QJV_B Chain B, PECTIN METHYLESTERASE [Dickeya chrysanthemi] |
| 2NTB_A | 1.44e-128 | 27 | 357 | 4 | 337 | Crystalstructure of pectin methylesterase in complex with hexasaccharide V [Dickeya dadantii 3937],2NTB_B Crystal structure of pectin methylesterase in complex with hexasaccharide V [Dickeya dadantii 3937],2NTP_A Crystal structure of pectin methylesterase in complex with hexasaccharide VI [Dickeya dadantii 3937],2NTP_B Crystal structure of pectin methylesterase in complex with hexasaccharide VI [Dickeya dadantii 3937],2NTQ_A Crystal structure of pectin methylesterase in complex with hexasaccharide VII [Dickeya dadantii 3937],2NTQ_B Crystal structure of pectin methylesterase in complex with hexasaccharide VII [Dickeya dadantii 3937] |
| 5C1E_A | 8.48e-18 | 40 | 358 | 19 | 295 | CrystalStructure of the Pectin Methylesterase from Aspergillus niger in Penultimately Deglycosylated Form (N-acetylglucosamine Stub at Asn84) [Aspergillus niger ATCC 1015] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P0C1A8 | 4.40e-128 | 22 | 357 | 23 | 361 | Pectinesterase A OS=Dickeya chrysanthemi OX=556 GN=pemA PE=1 SV=1 |
| P0C1A9 | 6.24e-128 | 22 | 357 | 23 | 361 | Pectinesterase A OS=Dickeya dadantii (strain 3937) OX=198628 GN=pemA PE=1 SV=1 |
| Q9FJ21 | 3.25e-27 | 18 | 304 | 251 | 506 | Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana OX=3702 GN=PME58 PE=2 SV=1 |
| Q4PT34 | 9.73e-24 | 30 | 299 | 47 | 286 | Probable pectinesterase 56 OS=Arabidopsis thaliana OX=3702 GN=PME56 PE=2 SV=1 |
| O04887 | 1.97e-22 | 22 | 304 | 196 | 445 | Pectinesterase 2 OS=Citrus sinensis OX=2711 GN=PECS-2.1 PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000223 | 0.999165 | 0.000161 | 0.000148 | 0.000138 | 0.000131 |