CAZyme Information: MGYG000002473_00241

Basic Information

• Species: Victivallis vadensis
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis vadensis
• CAZyme ID: MGYG000002473_00241
• CAZy Family: GH39
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1158	MGYG000002473_3|CGC1	128215.31	8.7393

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002473	4576885	Isolate	not provided	not provided

• Gene Location: Start: 29724; End: 33200 Strand: -

Full Sequence      

MKTRIFLSLFLLFQLIAASAAAERIRLSPDRGLYLHIPGQKEPILFPRSGDGVAVTWNPQ
ESKYISLSFPEKRKLPEFTRLSVTARFRVPADTPVRKVSLRLLDSGNENFQFSRPAVVRD
GLIEAVWEIPAGSQPHGWGGDGNKMLDQPARVYGFSIDHARQGNRTSLELLSVEIGVAGG
GTVSAERPFHTFNSDEIHRRRSGTGELHPGSEALLVTGIVGECFVTERRNPVRTFHAKPR
KLKVTAELLAGNPRLRWSFRDAGNRLLKTPALPLKLGKNTLEVDLDSLFAGARLPFRAEG
FTLSCDGDTPGAVLLTGATLVTAEPPSGALDLEIVTGNALHVLKWGEENAFKLKFTNRSN
RGGEFTADLEFRDFFGNGFRERATFQLEAGETAGHTPRRLPGSFGHWEVAADITEHGAPE
FRSRKTGNFAYLAPAGPTPGRAPGFLFGICNNSASWSPGEQQKGIEAAALCGAKIVRNTF
EWQRLQPAPDRWNFAPLDSLIDRHLAAGIELQGFFGFTPRWAAPPERRNASDWKSWNRGA
PDPGAWRNYVRTVLSRYRGKIRYWEVWNEPDLSGFNRMSLEEYAALLKTAGEIARQNAPE
AVVMTGGFATAIGHTGLKSPTFQRDCLKLARGAFQLHAYHQHGSFDRFRNAVDGKFLPMR
RETGTDVPWYANETAVSSMNGTERNQALTLFKKLIFAWARGAVGYNWYNLRNDGFDPMNA
EHNYGMMSFDFQPKPVYSVFNMLAGTFREARFLRPLETGDDFPAFVFADGKNLLIPAWNE
SGSGSTLSVALRTDAAAASVIDLMGNEVPQETEQGVALLSLTPMPATLKLKGASRVELAG
RLLEAAASGAAAPGRSFRVACRLFNPFDREREFRLKLENLPEEFRVSGNARHLTVPPNRT
ETVEFELSALPGFKPEYGHTCQLRLAYELHGTPWRGSLDIPVNSAVVIPARADFDRAPDF
RLRDISQVVSLTAADPALAHRLWRGPDDLSAELFLKLDGGELRIKVLVTDDRHVQPFTGF
SVWKGDNIQLAFQLPGQRGCWELGLSRLDTGRSEVFLYQAPDGFAPEAAQEMKLVTTRKE
NVTGYELAIPLKTVALTPAAARQGFRFNLLINDNDGEGRDGWIHIAPGIGENKNPERFPF
ILFEQEVGNFAAAPPRNP

Enzyme Prediction     

No EC number prediction in MGYG000002473_00241.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	491	782	2.9e-30	0.7262180974477959

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd09621	CBM9_like_5	2.58e-75	958	1143	1	188	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
cd09619	CBM9_like_4	5.52e-13	982	1128	29	175	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
cd00241	DOMON_like	9.56e-09	972	1124	1	157	Domon-like ligand-binding domains. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.
smart00633	Glyco_10	2.98e-08	482	601	3	123	Glycosyl hydrolase family 10.
pfam00331	Glyco_hydro_10	1.70e-06	478	601	42	163	Glycosyl hydrolase family 10.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM47149.1	0.0	19	1144	179	1307
AVM46276.1	0.0	12	1144	3	1137
AVM44759.1	7.33e-208	183	1144	18	965
AHF94342.1	5.10e-168	277	1145	154	1034
AHF90198.1	3.45e-162	295	1143	158	1005

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5JVK_A	1.12e-19	460	831	117	499	Structuralinsights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_B Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_C Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus]
4ZN2_A	2.20e-09	456	807	30	400	Glycosylhydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_B Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_C Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_D Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1]
5BX9_A	2.20e-09	456	807	30	400	Structureof PslG from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],5BXA_A Structure of PslG from Pseudomonas aeruginosa in complex with mannose [Pseudomonas aeruginosa PAO1]
3O2L_A	6.81e-06	447	592	19	151	CrystalStructure of an Inactive Kemp Elimination Design HG-1 [Thermoascus aurantiacus]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000295	0.999034	0.000167	0.000179	0.000152	0.000146

TMHMM  Annotations     

start	end
5	22