logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002473_01410

You are here: Home > Sequence: MGYG000002473_01410

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Victivallis vadensis
Lineage Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis vadensis
CAZyme ID MGYG000002473_01410
CAZy Family GH39
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
726 82502.94 8.6383
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002473 4576885 Isolate not provided not provided
Gene Location Start: 23542;  End: 25722  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002473_01410.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH39 140 342 8.4e-17 0.45011600928074247

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01229 Glyco_hydro_39 2.60e-04 194 330 101 227
Glycosyl hydrolases family 39.
cd21510 agarase_cat 0.006 178 327 42 185
alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AVM44255.1 4.18e-232 14 723 24 737
AVM47064.1 2.47e-21 19 495 170 635
BBO33316.1 4.80e-19 30 534 39 493
AVM44227.1 6.54e-15 19 465 27 459
QJE73275.1 4.02e-14 8 532 16 503

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6Y2K_A 6.94e-06 117 246 2 142
ChainA, beta-galactosidase [Marinomonas sp. ef1]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.270805 0.714020 0.014117 0.000418 0.000280 0.000342

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002473_01410.