CAZyme Information: MGYG000002473_01630

Basic Information

• Species: Victivallis vadensis
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis vadensis
• CAZyme ID: MGYG000002473_01630
• CAZy Family: GH39
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1310	MGYG000002473_49|CGC1	142845.71	6.4859

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002473	4576885	Isolate	not provided	not provided

• Gene Location: Start: 8804; End: 12736 Strand: +

Full Sequence      

MKAGKHLQMGGVGAVLFASAALAGAPVAFDAGVVRNAPGLEPKPFATENGSLTFAWEPKA
SPYVELAFQKPVTLPRFANARVGMKFRAPAGSPVGRMGLRLLDAKGETFQYTAPVSKNAD
GTLEVLWKVNPAEKFESWGMNADKVLDQPVRLNAFSIDYDRNAAPTELTLVSVDAETEDG
GSAAPLRLAVNAGAKKFVPGDRNAVELPYVAVPDGNGRGIEVSWDPSKSRYIEVLFNRPL
ALPEFNKVTVNAKFYAPAGCPVRNIGLRLGDASNEIFQYSKALSFTAGGVIDASWTVTPG
EWKNSWGGNADHQFDQPGKVRGFGVDYAPAGTSAKFYLLSLTAEVSGGAAQNATRTLYSF
DLANAFRKNWGTGTLSLGENGLSVGDIRGETAIAERKGELVFFNSRPTRIQLDAQLNAGQ
VKAYWVFRDAAGKELRSPELALKNGKNVLNFNLAELMKNVRLPIRVERLALVNSGSAPGS
VVLTGSRMSVAQPLAEAVDFEVQTGNGIGVLKTGMENALMLNFTNTAGEAGEFAIDVTFR
HFSGKTARESFRAALKPGESRSLSPKFRPDLLGHWDVEATVRNAEASNRTVRSFAYLRPA
GPTPGLAPGFLFSICTHSGRWSIMEQLLEAEAAATCGAKVIRDSVEWGSLQPERDVWNWE
RMDFLVNLYSALGIEHQALFAFTAKWAAPLEAQQSRNWLDWNRCAPDLDAWRTYVRTMAE
RYRGRIRYWEVWNEPDLSGFNKMSLDEYVALQKATYEEVKKVAPESVVMTGGFATLSDHP
GKKSPTFHRDYLNLAKGSFDVHAYHEHGSFAQFAQLVDGIFVPMRKETGTTASWYANETA
INSMNGSERNQALTLFKKLLYAWSRGAIGYTWYDLRNDGFDPLEGEHNYGMLTNDFQPKP
VYSVYNMLAGLYREMNYVKQLELGTNRWGFVFADGRDILIPAWDESGFGSAMTLAVKTDA
KSAAAIDLMGNETPVALLDGMALLEVTALPYTLKLAGAQSAEPAGTLLELAAGGVAVPGR
TFRFSLNVFNPLKHDCKFRLELSGLPEGLTAAETVREVEVAAGKNAVVEFAAEVASTLAP
EYGSRKELTVGYRLAGTPWAGSMTVPVNTAVAVPAGKNFDRKPDFTLDKRGQVVSLTAAD
PAMSHRVWRNADDLSAKIYLGEADGAMHMLVKVTDDKHHQPYSGFEVWKGDNIQFAFQLP
GQRGYWEFGLSHLNSGKSEIMPFQAPDGFDGAAAAGKLKLVTTRKGTETCYDLTIPESAV
GADSALLKQGIRFNLLVNDNDGEGRDGWMHIAPGIGENKNPDRFPFVLFE

Enzyme Prediction     

No EC number prediction in MGYG000002473_01630.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	653	927	2.8e-31	0.6890951276102089

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd09621	CBM9_like_5	2.96e-66	1123	1309	1	188	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
COG3693	XynA	1.71e-07	647	797	69	212	Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
smart00633	Glyco_10	1.86e-07	647	765	3	122	Glycosyl hydrolase family 10.
cd09619	CBM9_like_4	3.40e-07	1147	1294	29	175	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
pfam00331	Glyco_hydro_10	3.47e-07	647	735	46	128	Glycosyl hydrolase family 10.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM47149.1	0.0	1	1310	1	1307
AVM46276.1	0.0	198	1310	18	1137
AVM44759.1	2.16e-207	371	1310	40	965
AHF94342.1	6.51e-169	458	1310	177	1033
AHF90198.1	9.24e-167	206	1309	44	1005

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5JVK_A	3.53e-21	725	993	214	496	Structuralinsights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_B Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_C Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus]
4ZN2_A	1.18e-06	637	902	46	322	Glycosylhydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_B Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_C Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_D Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1]
5BX9_A	1.18e-06	637	902	46	322	Structureof PslG from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],5BXA_A Structure of PslG from Pseudomonas aeruginosa in complex with mannose [Pseudomonas aeruginosa PAO1]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.001345	0.997588	0.000247	0.000344	0.000234	0.000204

TMHMM  Annotations     

start	end
12	34