CAZyme Information: MGYG000002473_01932

Basic Information

• Species: Victivallis vadensis
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis vadensis
• CAZyme ID: MGYG000002473_01932
• CAZy Family: GH110
• CAZyme Description: Alpha-1,3-galactosidase B

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
551		60884.23	8.6558

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002473	4576885	Isolate	not provided	not provided

• Gene Location: Start: 15606; End: 17261 Strand: -

Full Sequence      

MKYSLFFALPLLAGTLAAAPVGLQQEIAAGISSGKKEIVLTQPEYRSGRTVELKKLDGVT
IDGNGARLVMTDLKHAVRLSNCRNVTVKNLTVDYDPLPFTQGVITSVSPDSRIVEFTIDK
GYPDLTGPYAVGRMHLFTADGKEWKRDAADLYGRTEIIDARHGRFRASKPEPAFAAGDRV
ALNQRKNGAFYLTGCGPVRFENITIHTCPSLGFCNRFSEGGDELINVKLARGPRPAEADA
ERLLSTCADGLNYAYIRRGPKLVNCDFSFMGDDSVNLHSVALPVVQLLDETTFDTLRPYK
HEEFAKVVRPGDRLRLLDPSDYSVVGEAVIRSFRPSPRKYDRETLKKFYFNRGDGLKDWT
AYEITLEPGGAPVKAGLFFDIPAIGANGFEIRDSRFHDHRGRALRIMASDGVIENNRFER
IKHAAITVGAEYGYWREAGWVENIQIRNNKIRDVGCNMMLQPDSYANGAISVFARLEDYS
GTFKGNRNITITGNSVDTCPAAGIFLFAADGVTLKDNRLVNTAFGKKTPGRDCGFTGLKP
VWIINSANVTQ

Enzyme Prediction     

No EC number prediction in MGYG000002473_01932.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH110	51	523	6.7e-49	0.8266423357664233

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13229	Beta_helix	3.16e-07	385	525	7	140	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam13229	Beta_helix	6.46e-07	385	517	53	156	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam05048	NosD	1.56e-04	381	525	44	155	Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.
pfam13229	Beta_helix	6.94e-04	408	550	8	104	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AHF94754.1	2.29e-112	18	522	39	545
AHF90434.1	4.90e-107	10	550	18	570
AHF90424.1	1.13e-105	4	550	9	572
SDS47926.1	1.06e-48	19	550	442	970
SHH19418.1	4.63e-48	45	549	89	603

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q89ZX0	1.21e-23	51	520	96	554	Alpha-1,3-galactosidase B OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=glaB PE=3 SV=1
B1KD83	2.11e-14	53	548	102	574	Alpha-1,3-galactosidase A OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=glaA PE=3 SV=1
Q64MU6	4.86e-14	53	522	101	553	Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=glaA PE=3 SV=1
B2UNU8	7.96e-14	51	520	287	741	Alpha-1,3-galactosidase B OS=Akkermansia muciniphila (strain ATCC BAA-835 / DSM 22959 / JCM 33894 / BCRC 81048 / CCUG 64013 / CIP 107961 / Muc) OX=349741 GN=glaB PE=3 SV=1
Q5L7M8	6.05e-13	53	522	101	553	Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow) OX=272559 GN=glaA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000657	0.998516	0.000210	0.000195	0.000195	0.000181

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002473_01932.