logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002473_02301

You are here: Home > Sequence: MGYG000002473_02301

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Victivallis vadensis
Lineage Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis vadensis
CAZyme ID MGYG000002473_02301
CAZy Family GH87
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
549 MGYG000002473_91|CGC1 58636.16 8.0702
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002473 4576885 Isolate not provided not provided
Gene Location Start: 4177;  End: 5826  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002473_02301.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH87 21 381 3.6e-19 0.507537688442211

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 6.03e-17 14 310 76 397
Polygalacturonase [Carbohydrate transport and metabolism].
pfam12708 Pectate_lyase_3 1.55e-07 22 64 3 46
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
pfam13229 Beta_helix 5.99e-04 164 318 1 145
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
PLN02188 PLN02188 0.001 22 65 38 82
polygalacturonase/glycoside hydrolase family protein
PLN02155 PLN02155 0.003 21 213 28 221
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AVM46992.1 3.39e-210 21 536 23 538
AVM46991.1 3.49e-105 21 431 25 453
AKK29103.1 2.28e-80 21 386 19 383
BBY49293.1 2.62e-78 10 367 10 394
BBX17974.1 1.39e-73 21 368 33 397

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q44492 7.29e-06 22 165 4 148
Mannuronan C5-epimerase AlgE5 OS=Azotobacter vinelandii OX=354 GN=algE5 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.002259 0.996159 0.000799 0.000277 0.000237 0.000244

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002473_02301.