CAZyme Information: MGYG000002473_03065

Basic Information

• Species: Victivallis vadensis
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis vadensis
• CAZyme ID: MGYG000002473_03065
• CAZy Family: CBM67
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
743		83529.19	5.6912

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002473	4576885	Isolate	not provided	not provided

• Gene Location: Start: 3527; End: 5758 Strand: -

Full Sequence      

MSIEPECRARWITRDLPGLTFQSEVMPAPCLRREFDCPAVFRKALVRIAAPGYCDLRLDG
GRIDRSELAPTVSVFDRRVRFLEIDVTGRLVPGKRSTWSAVLGNGWYNCHTHEVWHFDKA
PWRDYPKFRFELEIDGELFLASDRSWRVATGGLLFDGLRNGETYDARLEPSGWRLPGFDD
SGWERAVITAPPGGILTRQTAPCCQVMRRLEPVRLDRTGNRITADFGENLTGWCRITVKA
PAGTVFTIRYYERLAPDGQPEQPHAERLAQYILDGEFQTDHYTAAGVPEGESWRPRFTYH
GFRYAVIELSDPAAELCAVEAQFVCSAFERTGEYRTSDENFNRLTECAVRSYLGNFTGIP
TDCPQREKNGWTGDALLAAETGLFLFDAASSYSEWLETLCDSQRPSGQLPAIAPTGGWGF
NGCSGPAWDSVLVLLPWSIYLHTGDRRVPEKFFPAMLRYLDYCREREEADGLLDFGLADW
CAPNCIEGRVERCFSSSAYYIRDLETAAVIAGLFGEAETGRTLQQRAAAVRTALLHRFRH
SAGEWGNGGMTELGMALEMDLVPEHERLQAAAALAELARKVSCQAQFGIQGARYVPRALA
RNGHIDTAWRFFTQHSYPGWMHWLDSGATTLLENWEGSQSWNHIMYGDFVAFAFEYLGGI
RLTPGFAAGGPLRVAPCIPAELDSFQARCRTGRGEVECRWRRHGGRLEFELTLPAAVEAE
LTLCDRQFRQGPGKQRYTVSQAD

Enzyme Prediction     

No EC number prediction in MGYG000002473_03065.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH78	220	723	1.8e-132	0.9861111111111112
CBM67	9	193	1.5e-26	0.9715909090909091

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17389	Bac_rhamnosid6H	4.45e-89	329	657	1	340	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam08531	Bac_rhamnosid_N	1.25e-39	42	208	4	172	Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
pfam05592	Bac_rhamnosid	2.30e-21	225	308	11	85	Bacterial alpha-L-rhamnosidase concanavalin-like domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam17390	Bac_rhamnosid_C	1.21e-10	659	723	1	63	Bacterial alpha-L-rhamnosidase C-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM44981.1	3.62e-201	2	712	24	728
AVM44977.1	1.06e-198	28	721	17	701
QGQ94103.1	2.20e-153	9	721	125	838
AHF16194.1	2.57e-149	14	723	158	861
AYB33152.1	4.12e-149	27	719	183	872

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6I60_A	3.31e-91	4	721	142	896	Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]
3W5M_A	4.51e-77	31	721	305	992	CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]
6GSZ_A	6.79e-65	32	700	135	816	Crystalstructure of native alfa-L-rhamnosidase from Aspergillus terreus [Aspergillus terreus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
T2KPL4	3.71e-79	22	723	178	906	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1
Q82PP4	2.16e-76	31	721	305	992	Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
T2KNB2	1.28e-69	8	723	150	878	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2
P9WF03	1.41e-62	22	720	164	875	Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000067	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002473_03065.