CAZyme Information: MGYG000002473_03154

Basic Information

• Species: Victivallis vadensis
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis vadensis
• CAZyme ID: MGYG000002473_03154
• CAZy Family: GH39
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1000		110110.24	8.497

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002473	4576885	Isolate	not provided	not provided

• Gene Location: Start: 2093; End: 5095 Strand: -

Full Sequence      

MFKRFLLSAALLPVVCTGAVPLGNFSTAAPWVVNDSEKRNQSLTPHSLPGTGEKGLKLAW
DGYAFPYAELHLRKPLPLPADFRQGSVSLRLRLPARAPVRSVSLRLVDATGEIFQYQLRT
LPPAEAKTLTVDYPVNLAESKNSSWGGNNDKKFDLPVALKGFSIDFERESGAGEALFLGV
EAAAKTPAASAADSIRLEIETGNPVHVLTPEKADQLRLSLRNTGSVRFRGEAEAVFEDFF
GRTFSEKLPSIDLAAGEVMTCPIRKQLPASGHWDVRLRLRTGDGEVTKKRSFASFKPAGP
TPGRAEGFLWGISSHPQLHPAQVQKLEALAAALVGAKVVREDVYWHRVQPARGQWDFRSF
DQTAAIFAEQGIELQAILCYCAPWAARDPGAKRPDKAEPEPEAWKTFCREMAKRYRGKVR
FWEVWNEPDVTPFSGISSASYAKMMLNAYNAVKAGNPDARVLTGGFATLANHPMLREPGY
QENALKLGKGGYDIHAYHEHGDYPHFVRMVEERFLPMRKRAGVTEPWWANETALTSSGGN
EKPQALALCKKLIYAWSRGAIGYNWYDLRNDGDDPNHGEHNYGMLTRDFYPKPVYTVYNT
LTTLFGGKEFVRQFDGGEGEWLFLFRDGGEMALAAWSENGGLLPVIVRTDAVSAEAVDLM
NNSRPVEIHDGRILLEIGSVPVTLRLKGATRAEFAGNPVRLESADIALPGKTYRFAAKLT
NPLDEPAEFALEFRAPAGFRPEKTQRRITVPAGKTVELACELRADETLRPAFGVPVSLTA
DYRLSGDTVKGSIAMPVRVAQVVPQGATAGRAPDFTLAHRRQVRELFTGDPSRGHLLWKG
PRDLSGRVSLGTEGANLLLLVHVTDNIHCQPERGANTWMGDNVQFALELPGRKDAWEFGL
TRLADGSPEVWCWNAPEGFAPASAARGIALATSRKGTETVYRAKIPFETLGLTPELLKKG
FRFNLLINDNDGGGRQGWISIAPGIGERKDPSQFPFVIFD

Enzyme Prediction     

No EC number prediction in MGYG000002473_03154.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	351	638	5e-27	0.728538283062645

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd09621	CBM9_like_5	5.81e-76	813	999	1	188	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
cd09619	CBM9_like_4	2.09e-15	837	984	29	175	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
cd00241	DOMON_like	1.47e-09	838	980	12	157	Domon-like ligand-binding domains. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.
pfam06452	CBM9_1	3.27e-07	843	994	30	176	Carbohydrate family 9 binding domain-like. CBM9_1 is a C-terminal domain on bacterial xylanase proteins, and it is tandemly repeated in a number of family-members. The CBM9 module binds to amorphous and crystalline cellulose and a range of soluble di- and monosaccharides as well as to cello- and xylo- oligomers of different degrees of polymerization. Comparison of the glucose and cellobiose complexes during crystallisation reveals surprising differences in binding of these two substrates by CBM9-2. Cellobiose was found to bind in a distinct orientation from glucose, while still maintaining optimal stacking and electrostatic interactions with the reducing end sugar.
smart00633	Glyco_10	5.07e-04	345	460	3	124	Glycosyl hydrolase family 10.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM47149.1	8.55e-234	54	1000	212	1307
AVM46276.1	1.31e-222	49	1000	30	1137
AHF94342.1	1.35e-191	16	1000	44	1033
AVM44759.1	1.51e-187	198	1000	161	965
AHF90198.1	1.76e-179	32	999	34	1005

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5JVK_A	2.93e-20	333	687	127	499	Structuralinsights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_B Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_C Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.086171	0.897615	0.012627	0.002725	0.000471	0.000365

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002473_03154.