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CAZyme Information: MGYG000002474_00974

You are here: Home > Sequence: MGYG000002474_00974

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Rahnella variigena
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Rahnella; Rahnella variigena
CAZyme ID MGYG000002474_00974
CAZy Family GH24
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
169 MGYG000002474_3|CGC4 18155.22 9.1107
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002474 3995023 Isolate Australia Oceania
Gene Location Start: 206660;  End: 207169  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002474_00974.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH24 30 161 5.4e-46 0.9854014598540146

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd16901 lyz_P1 8.67e-65 29 166 2 140
P1 lysozyme Lyz-like proteins. Enterobacteria phage P1 lysozyme Lyz is secreted to the Escherichia coli periplasm where it is membrane bound and inactive. Activation involves the release from the membrane, an intramolecular thiol-disulfide isomerization and extensive structural rearrangement of the N-terminal region. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
cd00737 lyz_endolysin_autolysin 3.04e-50 33 166 1 136
endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
COG3772 RrrD 2.00e-42 29 169 7 151
Phage-related lysozyme (muramidase), GH24 family [Cell wall/membrane/envelope biogenesis].
cd16900 endolysin_R21-like 1.70e-39 31 166 6 142
endolysin R21-like proteins. Unlike T4 E phage lysozyme, the endolysin R21 from Enterobacteria phage P21 has an N-terminal SAR (signal-arrest-release) domain that anchors the endolysin to the membrane in an inactive form, which act to prevent premature lysis of the infected bacterium. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
pfam00959 Phage_lysozyme 8.31e-15 54 159 1 107
Phage lysozyme. This family includes lambda phage lysozyme and E. coli endolysin.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADW73106.1 4.37e-114 1 169 1 169
AZP52483.1 5.10e-113 1 169 1 169
QUT17077.1 5.10e-113 1 169 1 169
ADW72213.1 9.89e-111 1 169 1 169
AZP43692.1 1.40e-110 1 169 1 169

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1XJU_A 9.13e-24 28 169 1 154
ChainA, Lysozyme [Punavirus P1],1XJU_B Chain B, Lysozyme [Punavirus P1]
1XJT_A 7.69e-22 28 169 29 182
ChainA, Lysozyme [Punavirus P1]
6ET6_A 2.95e-18 29 167 52 195
ChainA, Lysozyme [Acinetobacter baumannii]
6H9D_A 1.88e-15 28 161 5 142
ChainA, Lysozyme [Asticcacaulis excentricus],6H9D_B Chain B, Lysozyme [Asticcacaulis excentricus],6H9D_C Chain C, Lysozyme [Asticcacaulis excentricus]
3HDF_A 4.57e-14 41 168 10 138
ChainA, Lysozyme [Enterobacteria phage P21],3HDF_B Chain B, Lysozyme [Enterobacteria phage P21]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q37875 8.55e-23 28 169 29 182
SAR-endolysin OS=Escherichia phage P1 OX=2886926 GN=17 PE=1 SV=1
Q9T1T5 5.08e-22 33 163 7 141
Endolysin OS=Acyrthosiphon pisum secondary endosymbiont phage 1 OX=2682836 GN=13 PE=3 SV=1
P07540 3.35e-17 27 163 1 140
Endolysin OS=Bacillus phage PZA OX=10757 GN=15 PE=3 SV=1
Q37896 5.01e-17 27 168 1 145
Endolysin OS=Bacillus phage B103 OX=10778 GN=15 PE=3 SV=1
P11187 1.26e-16 27 163 1 140
Endolysin OS=Bacillus phage phi29 OX=10756 GN=15 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000423 0.998866 0.000190 0.000188 0.000163 0.000157

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002474_00974.