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CAZyme Information: MGYG000002474_03257

You are here: Home > Sequence: MGYG000002474_03257

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Rahnella variigena
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Rahnella; Rahnella variigena
CAZyme ID MGYG000002474_03257
CAZy Family GH39
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
348 MGYG000002474_21|CGC3 39765.05 7.2798
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002474 3995023 Isolate Australia Oceania
Gene Location Start: 53258;  End: 54304  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002474_03257.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH39 73 338 4.4e-25 0.6380510440835266

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00150 Cellulase 1.05e-11 43 290 29 259
Cellulase (glycosyl hydrolase family 5).
COG2723 BglB 5.79e-05 47 177 68 210
Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].
PRK09589 celA 1.68e-04 43 143 69 176
6-phospho-beta-glucosidase; Reviewed
pfam00232 Glyco_hydro_1 4.15e-04 44 176 64 206
Glycosyl hydrolase family 1.
pfam01229 Glyco_hydro_39 8.91e-04 105 266 113 270
Glycosyl hydrolases family 39.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QBJ08916.1 5.24e-233 1 344 1 344
ATR01912.1 7.62e-133 27 335 24 332
ATR07087.1 7.62e-133 27 335 24 332
ATR12484.1 7.62e-133 27 335 24 332
ATR18209.1 7.62e-133 27 335 24 332

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4ZN2_A 2.94e-08 44 342 39 329
Glycosylhydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_B Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_C Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_D Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1]
5BX9_A 2.94e-08 44 342 39 329
Structureof PslG from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],5BXA_A Structure of PslG from Pseudomonas aeruginosa in complex with mannose [Pseudomonas aeruginosa PAO1]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000460 0.998948 0.000176 0.000139 0.000133 0.000137

TMHMM  Annotations      download full data without filtering help

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