dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000002476_00849

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Basic Information help

Species

Yersinia pestis

Lineage

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia pestis

CAZyme ID

MGYG000002476_00849

CAZy Family

AA10

CAZyme Description

GlcNAc-binding protein A

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
464	MGYG000002476_3\|CGC5	51353.12	5.2308

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002476	4935125	Isolate	Russia	Europe

Gene Location

Start: 719838; End: 721232 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000002476_00849.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
AA10	21	210	1.5e-40	0.9943820224719101

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd21177	LPMO_AA10	8.67e-50	21	210	1	180	lytic polysaccharide monooxygenase (LPMO) auxiliary activity family 10 (AA10). AA10 proteins are copper-dependent lytic polysaccharide monooxygenases (LPMOs), which may act on chitin or cellulose. The family used to be called CBM33. Activities in this family include lytic cellulose monooxygenase (C1-hydroxylating) (EC 1.14.99.54), lytic cellulose monooxygenase (C4-dehydrogenating) (EC 1.14.99.56), lytic chitin monooxygenase (EC 1.14.99.53), and lytic xylan monooxygenase/xylan oxidase (glycosidic bond-cleaving) (EC 1.14.99.-). Also included are viral chitin-binding glycoproteins such as fusolin and spheroidin-like proteins.
pfam03067	LPMO_10	6.97e-42	21	209	1	186	Lytic polysaccharide mono-oxygenase, cellulose-degrading. This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.
PRK13211	PRK13211	1.00e-41	21	217	24	199	N-acetylglucosamine-binding protein GbpA.
COG3397	COG3397	5.75e-41	21	295	30	295	Predicted carbohydrate-binding protein, contains CBM5 and CBM33 domains [General function prediction only].
COG3979	COG3979	4.45e-17	308	453	1	139	Chitodextrinase [Carbohydrate transport and metabolism].

CAZyme Hits help

Hit ID	Query Start	Query End	Hit Start	Hit End
ABS49025.1	1	464	1	464
AJK14669.1	1	464	1	464
AHK18601.1	1	464	1	465
AJJ57041.1	1	464	1	468
AYW91892.1	1	464	1	468

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3UAM_A	7.90e-67	10	211	10	215	Crystalstructure of a chitin binding domain from Burkholderia pseudomallei [Burkholderia pseudomallei 1710b],3UAM_B Crystal structure of a chitin binding domain from Burkholderia pseudomallei [Burkholderia pseudomallei 1710b],3UAM_C Crystal structure of a chitin binding domain from Burkholderia pseudomallei [Burkholderia pseudomallei 1710b],3UAM_D Crystal structure of a chitin binding domain from Burkholderia pseudomallei [Burkholderia pseudomallei 1710b],3UAM_E Crystal structure of a chitin binding domain from Burkholderia pseudomallei [Burkholderia pseudomallei 1710b],3UAM_F Crystal structure of a chitin binding domain from Burkholderia pseudomallei [Burkholderia pseudomallei 1710b]
2YOX_A	4.67e-29	21	210	1	176	Bacillusamyloliquefaciens CBM33 in complex with Cu(I) after photoreduction [Bacillus amyloliquefaciens],2YOX_B Bacillus amyloliquefaciens CBM33 in complex with Cu(I) after photoreduction [Bacillus amyloliquefaciens],2YOY_A Bacillus amyloliquefaciens CBM33 in complex with Cu(I) reduced using ascorbate [Bacillus amyloliquefaciens],2YOY_B Bacillus amyloliquefaciens CBM33 in complex with Cu(I) reduced using ascorbate [Bacillus amyloliquefaciens]
2YOW_A	4.79e-29	21	210	1	176	Bacillusamyloliquefaciens CBM33 [Bacillus amyloliquefaciens],2YOW_B Bacillus amyloliquefaciens CBM33 [Bacillus amyloliquefaciens],5IJU_A Structure of an AA10 Lytic Polysaccharide Monooxygenase from Bacillus amyloliquefaciens with Cu(II) bound [Bacillus amyloliquefaciens],5IJU_B Structure of an AA10 Lytic Polysaccharide Monooxygenase from Bacillus amyloliquefaciens with Cu(II) bound [Bacillus amyloliquefaciens]
5WSZ_A	1.34e-28	21	212	1	167	Crystalstructure of a lytic polysaccharide monooxygenase,BtLPMO10A, from Bacillus thuringiensis [Bacillus thuringiensis serovar kurstaki],5WSZ_B Crystal structure of a lytic polysaccharide monooxygenase,BtLPMO10A, from Bacillus thuringiensis [Bacillus thuringiensis serovar kurstaki],5WSZ_C Crystal structure of a lytic polysaccharide monooxygenase,BtLPMO10A, from Bacillus thuringiensis [Bacillus thuringiensis serovar kurstaki],5WSZ_D Crystal structure of a lytic polysaccharide monooxygenase,BtLPMO10A, from Bacillus thuringiensis [Bacillus thuringiensis serovar kurstaki]
2BEM_A	4.59e-26	21	210	1	167	Crystalstructure of the Serratia marcescens chitin-binding protein CBP21 [Serratia marcescens],2BEM_B Crystal structure of the Serratia marcescens chitin-binding protein CBP21 [Serratia marcescens],2BEM_C Crystal structure of the Serratia marcescens chitin-binding protein CBP21 [Serratia marcescens],2LHS_A Structure of the chitin binding protein 21 (CBP21) [Serratia marcescens]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P20533	7.28e-28	220	462	465	698	Chitinase A1 OS=Niallia circulans OX=1397 GN=chiA1 PE=1 SV=1
Q8EHY2	8.56e-27	18	211	25	195	GlcNAc-binding protein A OS=Shewanella oneidensis (strain MR-1) OX=211586 GN=gbpA PE=3 SV=2
P50899	2.58e-26	220	452	798	1061	Exoglucanase B OS=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) OX=590998 GN=cbhB PE=1 SV=1
C3LW75	1.20e-24	52	284	60	266	GlcNAc-binding protein A OS=Vibrio cholerae serotype O1 (strain M66-2) OX=579112 GN=gbpA PE=3 SV=1
Q9KLD5	1.62e-24	52	284	60	266	GlcNAc-binding protein A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=gbpA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000042	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM Annotations help

There is no transmembrane helices in MGYG000002476_00849.