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CAZyme Information: MGYG000002478_00130

You are here: Home > Sequence: MGYG000002478_00130

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola dorei
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola dorei
CAZyme ID MGYG000002478_00130
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
464 MGYG000002478_1|CGC7 52363.59 5.6002
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002478 5444912 Isolate Finland Europe
Gene Location Start: 188967;  End: 190361  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002478_00130.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 188 447 1.5e-43 0.7569230769230769

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.31e-11 200 417 230 458
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 9.53e-10 191 446 88 309
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 8.39e-05 213 377 229 396
Probable polygalacturonase
pfam13229 Beta_helix 0.004 191 338 3 137
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
COG1148 HdrA 0.005 5 83 373 441
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QJR54182.1 0.0 1 464 1 464
QJR61020.1 0.0 1 464 1 464
ALA72160.1 0.0 1 464 1 464
AII66316.1 0.0 1 464 1 464
AND18138.1 0.0 1 464 1 464

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A1DBR6 1.15e-09 186 443 231 456
Probable endopolygalacturonase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaD PE=3 SV=1
B8MW78 1.90e-07 198 451 260 481
Probable endopolygalacturonase D OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgaD PE=3 SV=1
Q2UT29 1.90e-07 198 451 260 481
Probable endopolygalacturonase D OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pgaD PE=3 SV=2
P49062 6.49e-06 151 410 91 352
Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000205 0.999164 0.000173 0.000142 0.000143 0.000134

TMHMM  Annotations      download full data without filtering help

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