CAZyme Information: MGYG000002478_01329

Basic Information

• Species: Phocaeicola dorei
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola dorei
• CAZyme ID: MGYG000002478_01329
• CAZy Family: PL10
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
713	MGYG000002478_1|CGC33	81718.07	8.4276

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002478	5444912	Isolate	Finland	Europe

• Gene Location: Start: 1770126; End: 1772267 Strand: +

Full Sequence      

MKNTFKKVFIGFMVFAMVTGSFAQQRAHKKDNESYPKEWKQIARMEQDSFFLTDEARRIA
ENVLAFQRCTGGWPKNIDMARRMNDKELVKVIKDKSRRDDSTIDNNATTAQMIFLARLYR
QTKDIRYRDAFLQGVEYLLSGQYENGGWPQFWPGPRGYQIHITFNDDAIVNTLNMIRDMM
NHKAPYEDDLIDKALCVRLGKAFNKGIECILATQIIKDGEPSVWCQQNDRETLKPAPARA
YELPSYCSAESAGIVRLLMELPAPDARVKRAVHGAMKWFDRYKLTGLKCERIVLANGERD
TRLVEDPQAKPIWARYYDLKYCEPYVCDRDGLPRRHLEEIGTERRNGYSWYNSRPAELFA
IYNAWADKYDPKHKVAISLATKGANENGLIEMYRRPVAERTAFDVVVKPGESIQAAIEKA
PEIPTVPFKILLLNGTYHQKVIIDRPNIVLVGENRDSTRIVLAETAQTRAITEYHGRPVG
NGVIVLQEGADDCVISGLTVYNNYGTAVENTTIHQMAIFGRATRTIIINSNVWADGNDAL
SLWAPGSNGMYYHADLYLRCPGVDFLCPRGWCYATRCHFYGDSRAMIWHDGRGDKNKKLV
ITNSSFDAKTPTLLGRYHHDSQFYLIKCKMSKNVLDGNIHYAYSDKVLDPCPWGLRTYYY
GCTREGGHSGWLNDNLKEAENAPEFYGVTAKWTFNGKWDPEQRIRDLWNVLAY

Enzyme Prediction     

No EC number prediction in MGYG000002478_01329.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL10	67	358	1.8e-112	0.9965277777777778
CE8	411	637	4e-25	0.7743055555555556

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam09492	Pec_lyase	1.99e-178	67	359	1	289	Pectic acid lyase. Members of this family are isozymes of pectate lyase (EC:4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
TIGR02474	pec_lyase	1.23e-111	67	358	1	289	pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase. [Energy metabolism, Biosynthesis and degradation of polysaccharides]
pfam01095	Pectinesterase	1.84e-05	404	661	1	257	Pectinesterase.
PLN02497	PLN02497	1.56e-04	412	504	46	128	probable pectinesterase
PLN02488	PLN02488	0.006	392	460	186	261	probable pectinesterase/pectinesterase inhibitor

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QJR57392.1	0.0	1	713	1	713
QJR57812.1	0.0	1	713	1	713
ALA73154.1	0.0	1	713	1	713
AND19030.1	0.0	1	713	1	713
AII67310.1	0.0	1	713	1	713

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1R76_A	1.04e-57	49	365	76	404	ChainA, pectate lyase [Niveispirillum irakense]
1GXM_A	5.24e-48	60	350	37	314	Family10 polysaccharide lyase from Cellvibrio cellulosa [Cellvibrio japonicus],1GXM_B Family 10 polysaccharide lyase from Cellvibrio cellulosa [Cellvibrio japonicus],1GXN_A Family 10 polysaccharide lyase from Cellvibrio cellulosa [Cellvibrio japonicus]
1GXO_A	6.80e-47	60	350	37	314	MutantD189A of Family 10 polysaccharide lyase from Cellvibrio cellulosa in complex with trigalaturonic acid [Cellvibrio japonicus]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000576	0.998634	0.000217	0.000214	0.000177	0.000167

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002478_01329.