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CAZyme Information: MGYG000002478_02312
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phocaeicola dorei | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola dorei | |||||||||||
| CAZyme ID | MGYG000002478_02312 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 2953835; End: 2955172 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 81 | 430 | 7.9e-60 | 0.9415384615384615 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 2.07e-49 | 54 | 352 | 83 | 395 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| pfam00295 | Glyco_hydro_28 | 2.19e-14 | 138 | 351 | 42 | 240 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| PLN03003 | PLN03003 | 9.70e-09 | 149 | 325 | 112 | 261 | Probable polygalacturonase At3g15720 |
| PLN03010 | PLN03010 | 3.58e-08 | 144 | 272 | 133 | 237 | polygalacturonase |
| TIGR03808 | RR_plus_rpt_1 | 4.68e-08 | 49 | 210 | 35 | 156 | twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AII62283.1 | 0.0 | 1 | 445 | 1 | 445 |
| QJR58759.1 | 0.0 | 1 | 445 | 1 | 445 |
| QJR71669.1 | 0.0 | 1 | 445 | 1 | 445 |
| QUT87637.1 | 0.0 | 1 | 445 | 1 | 445 |
| QJR56443.1 | 0.0 | 1 | 445 | 1 | 445 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5OLP_A | 9.96e-34 | 45 | 417 | 39 | 425 | Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482] |
| 3JUR_A | 2.37e-25 | 44 | 320 | 18 | 316 | Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima] |
| 1BHE_A | 2.58e-11 | 70 | 424 | 26 | 367 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
| 2UVE_A | 5.76e-11 | 55 | 320 | 158 | 455 | Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica] |
| 4C2L_A | 4.54e-08 | 98 | 270 | 46 | 216 | Crystalstructure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A7PZL3 | 6.78e-23 | 56 | 320 | 65 | 331 | Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 |
| P15922 | 3.76e-16 | 26 | 320 | 126 | 448 | Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1 |
| Q7M1E7 | 9.73e-14 | 149 | 413 | 145 | 401 | Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1 |
| P26216 | 9.22e-12 | 51 | 291 | 38 | 260 | Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1 |
| P35338 | 1.64e-11 | 51 | 291 | 38 | 260 | Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000279 | 0.999065 | 0.000229 | 0.000150 | 0.000145 | 0.000127 |