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CAZyme Information: MGYG000002487_01030
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Gordonibacter pamelaeae | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Eggerthellaceae; Gordonibacter; Gordonibacter pamelaeae | |||||||||||
| CAZyme ID | MGYG000002487_01030 | |||||||||||
| CAZy Family | GH73 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 29647; End: 31467 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH73 | 440 | 583 | 5.5e-25 | 0.9609375 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG4193 | LytD | 1.55e-59 | 376 | 606 | 43 | 245 | Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]. |
| smart00047 | LYZ2 | 3.40e-23 | 433 | 583 | 5 | 137 | Lysozyme subfamily 2. Eubacterial enzymes distantly related to eukaryotic lysozymes. |
| pfam04122 | CW_binding_2 | 2.21e-12 | 144 | 235 | 1 | 80 | Putative cell wall binding repeat 2. This repeat is found in multiple tandem copies in proteins including amidase enhancers and adhesins. |
| pfam01832 | Glucosaminidase | 3.68e-10 | 441 | 507 | 1 | 50 | Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase. This family includes Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EC:3.2.1.96. As well as the flageller protein J that has been shown to hydrolyze peptidoglycan. |
| COG2247 | LytB | 9.14e-09 | 68 | 182 | 30 | 147 | Putative cell wall-binding domain [Cell wall/membrane/envelope biogenesis]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QOS67179.1 | 8.05e-128 | 3 | 605 | 126 | 714 |
| QKF06896.1 | 4.52e-122 | 45 | 606 | 132 | 698 |
| BCS56855.1 | 9.78e-67 | 365 | 606 | 828 | 1072 |
| BCA89043.1 | 3.99e-66 | 352 | 606 | 788 | 1048 |
| QEZ68409.1 | 1.35e-36 | 377 | 606 | 171 | 394 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6FXO_A | 2.75e-34 | 406 | 606 | 62 | 244 | ChainA, Bifunctional autolysin [Staphylococcus aureus subsp. aureus Mu50] |
| 4PI7_A | 2.01e-26 | 435 | 592 | 78 | 218 | ChainA, Autolysin E [Staphylococcus aureus subsp. aureus Mu50],4PI9_A Chain A, Autolysin E [Staphylococcus aureus subsp. aureus Mu50],4PIA_A Chain A, Autolysin E [Staphylococcus aureus subsp. aureus Mu50] |
| 6FXP_A | 1.26e-25 | 381 | 606 | 46 | 246 | ChainA, Uncharacterized protein [Staphylococcus aureus subsp. aureus Mu50],6FXP_B Chain B, Uncharacterized protein [Staphylococcus aureus subsp. aureus Mu50] |
| 4PI8_A | 1.29e-25 | 435 | 592 | 78 | 218 | ChainA, Autolysin E [Staphylococcus aureus subsp. aureus Mu50] |
| 6U0O_B | 4.15e-25 | 381 | 606 | 76 | 276 | ChainB, LYZ2 domain-containing protein [Staphylococcus aureus subsp. aureus NCTC 8325] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P39848 | 3.34e-33 | 380 | 606 | 678 | 880 | Beta-N-acetylglucosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=lytD PE=1 SV=1 |
| Q6GAG0 | 1.41e-30 | 406 | 606 | 1068 | 1250 | Bifunctional autolysin OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=atl PE=3 SV=1 |
| Q6GI31 | 1.41e-30 | 406 | 606 | 1075 | 1257 | Bifunctional autolysin OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=atl PE=3 SV=1 |
| Q8NX96 | 1.41e-30 | 406 | 606 | 1074 | 1256 | Bifunctional autolysin OS=Staphylococcus aureus (strain MW2) OX=196620 GN=atl PE=3 SV=1 |
| Q5HH31 | 1.41e-30 | 406 | 606 | 1074 | 1256 | Bifunctional autolysin OS=Staphylococcus aureus (strain COL) OX=93062 GN=atl PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.999926 | 0.000085 | 0.000005 | 0.000000 | 0.000000 | 0.000001 |