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CAZyme Information: MGYG000002487_01032

You are here: Home > Sequence: MGYG000002487_01032

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Gordonibacter pamelaeae
Lineage Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Eggerthellaceae; Gordonibacter; Gordonibacter pamelaeae
CAZyme ID MGYG000002487_01032
CAZy Family GT2
CAZyme Description Galactofuranosyltransferase GlfT2
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
610 MGYG000002487_3|CGC2 69152.03 5.2435
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002487 3399341 Isolate United States North America
Gene Location Start: 33315;  End: 35147  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002487_01032.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG1216 GT2 1.06e-14 178 451 23 292
Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism].
cd02526 GT2_RfbF_like 2.58e-09 167 364 2 187
RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
cd04185 GT_2_like_b 1.63e-08 179 362 19 155
Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
pfam13641 Glyco_tranf_2_3 2.52e-08 152 364 1 195
Glycosyltransferase like family 2. Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis.
pfam17994 Glft2_N 0.005 43 117 44 110
Galactofuranosyltransferase 2 N-terminal. This is the N-terminal beta-barrel domain found in the polymerizing galactofuranosyltransferase GlfT2 (Rv3808c). This enzyme synthesizes the bulk of the galactan portion of the mycolyl-arabinogalactan complex, which is the largest component of the mycobacterial cell wall such as in Mycobacterium tuberculosis. The N-terminal domain contains two short helices preceding a 10-stranded beta-sandwich with jelly roll topology.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BAK44118.1 1.49e-231 6 605 6 617
QUC02092.1 8.87e-207 1 606 1 613
BBH50146.1 1.62e-192 1 606 1 612
AEB07220.1 4.65e-143 1 604 1 623
ATO39484.1 1.59e-133 1 606 1 623

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4FIX_A 6.71e-30 44 604 73 646
CrystalStructure of GlfT2 [Mycobacterium tuberculosis H37Rv],4FIX_B Crystal Structure of GlfT2 [Mycobacterium tuberculosis H37Rv],4FIY_A Crystal Structure of GlfT2 Complexed with UDP [Mycobacterium tuberculosis H37Rv],4FIY_B Crystal Structure of GlfT2 Complexed with UDP [Mycobacterium tuberculosis H37Rv]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A0R628 6.15e-38 44 604 64 636
Galactofuranosyltransferase GlfT2 OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=glfT2 PE=3 SV=1
O53585 3.36e-29 44 604 53 626
Galactofuranosyltransferase GlfT2 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=glfT2 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999387 0.000608 0.000039 0.000002 0.000001 0.000004

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002487_01032.