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CAZyme Information: MGYG000002493_02781

You are here: Home > Sequence: MGYG000002493_02781

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Enterococcus_B pernyi
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus_B; Enterococcus_B pernyi
CAZyme ID MGYG000002493_02781
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
369 MGYG000002493_17|CGC1 40608.19 4.6932
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002493 3324684 Isolate Chile South America
Gene Location Start: 1078;  End: 2187  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002493_02781.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 86 293 4.6e-60 0.8366336633663366

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
smart00656 Amb_all 9.91e-63 87 294 12 190
Amb_all domain.
COG3866 PelB 9.37e-60 4 365 10 340
Pectate lyase [Carbohydrate transport and metabolism].
pfam00544 Pec_lyase_C 1.35e-45 87 290 30 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QCJ57963.1 7.15e-240 1 369 1 369
AIM25983.1 1.52e-163 1 365 1 371
BAK22145.1 4.02e-163 26 365 9 349
BBP07856.1 1.44e-161 1 365 1 371
BBD17300.1 1.44e-161 1 365 1 371

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1VBL_A 5.08e-43 85 365 126 411
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1PCL_A 8.09e-41 21 290 1 276
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
1OOC_A 1.01e-33 63 290 59 287
ChainA, Pectate lyase A [Dickeya chrysanthemi],1OOC_B Chain B, Pectate lyase A [Dickeya chrysanthemi],1PE9_A Chain A, Pectate lyase A [Dickeya chrysanthemi],1PE9_B Chain B, Pectate lyase A [Dickeya chrysanthemi]
1JRG_A 1.95e-33 63 290 59 287
ChainA, Pectate lyase [Dickeya chrysanthemi],1JRG_B Chain B, Pectate lyase [Dickeya chrysanthemi],1JTA_A Chain A, pectate lyase A [Dickeya chrysanthemi]
3VMV_A 2.67e-32 30 320 6 287
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q5AVN4 2.85e-43 20 315 34 284
Pectate lyase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyA PE=1 SV=1
P0C1A5 4.37e-41 28 290 54 324
Pectate lyase E OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelE PE=3 SV=2
P0C1A4 4.37e-41 28 290 54 324
Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=3 SV=1
P04960 1.13e-40 16 290 26 306
Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=1 SV=1
P18209 3.53e-39 28 290 43 312
Pectate lyase D OS=Dickeya chrysanthemi OX=556 GN=pelD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000280 0.998960 0.000200 0.000192 0.000179 0.000156

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002493_02781.