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CAZyme Information: MGYG000002503_03087

You are here: Home > Sequence: MGYG000002503_03087

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Enterobacter ludwigii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter ludwigii
CAZyme ID MGYG000002503_03087
CAZy Family GH23
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
146 MGYG000002503_8|CGC1 16635.99 8.8491
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002503 4697885 Isolate Australia Oceania
Gene Location Start: 39738;  End: 40178  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002503_03087.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH23 27 141 3.7e-25 0.837037037037037

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK15328 PRK15328 3.61e-80 1 146 1 148
type III secretion system invasion protein IagB.
cd13400 LT_IagB-like 4.71e-54 27 138 1 108
Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.
pfam01464 SLT 2.99e-28 20 117 1 95
Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.
PRK13722 PRK13722 4.69e-26 18 141 21 146
lytic transglycosylase; Provisional
cd00254 LT-like 7.68e-17 31 138 1 111
lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AEW72887.1 7.35e-104 1 146 1 146
AOT42380.1 7.35e-104 1 146 1 146
QDE49524.1 7.35e-104 1 146 1 146
AVP01737.1 7.35e-104 1 146 1 146
QCU05354.1 7.35e-104 1 146 1 146

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4XP8_A 4.14e-10 18 101 2 86
Structureof EtgA D60N mutant [Escherichia coli]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
E1WAC2 1.21e-46 4 145 5 147
Invasion protein IagB OS=Salmonella typhimurium (strain SL1344) OX=216597 GN=iagB PE=3 SV=1
P0CL15 1.21e-46 4 145 5 147
Invasion protein IagB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=iagB PE=3 SV=1
P43018 3.45e-46 4 145 5 147
Invasion protein IagB OS=Salmonella typhi OX=90370 GN=iagB PE=3 SV=1
Q07568 1.27e-34 1 140 1 141
Protein IpgF OS=Shigella flexneri OX=623 GN=ipgF PE=3 SV=1
Q55287 7.23e-34 1 140 1 141
Protein IpgF OS=Shigella sonnei OX=624 GN=ipgF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000242 0.999130 0.000163 0.000148 0.000144 0.000139

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002503_03087.