CAZyme Information: MGYG000002508_02574

Basic Information

• Species: Hafnia alvei
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Hafnia; Hafnia alvei
• CAZyme ID: MGYG000002508_02574
• CAZy Family: GH0
• CAZyme Description: HTH-type transcriptional activator RhaR

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
793	MGYG000002508_1|CGC22	92815.28	8.8752

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002508	4498956	Isolate	South Korea	Asia

• Gene Location: Start: 2736450; End: 2738831 Strand: +

Full Sequence      

MDGKIKSLLDDYLLEIGNVIYHPTAAISGISLLFVLQGEIDIVIDEKLQRLGANQIAIVN
HNSHFSISGESDNILIKLVINSRYFLRYFPNYYQFRYLIPFQSPDYYYKYLCSLRALIAK
LTITQLRGSQESSQLEANSYLSEILLLLVVYFKEKEKKNTDSLNHSPYSRRIDNIIEFIS
KNSHRPLSLRQIAEQEHVSFAYLSRLFKKEVSINFTEYLSQLRLKNAMHTLSTTSKPIYQ
IAEECGFTRTRHLSDLFHRRYGKSAHQLRQENRSSTYLDSQHTAVSACVAGSQYLERPLK
HHQLLQLLTQTVNENSDRRLYHRIPIREQKLHLSGTKKTIKEPPNITLMVGEISQILKYS
IQQQISLTHKEIGVAYVEVYHLISGDSILPEFISDEYKPSFSPYDNTDEAIAFLHRHKIG
LILRLYMHKISCEPEQYLTKLSRFIQHNINMFGMRYLQSWRFICYPTDEKQRQNANISLI
FQSVYEVIKKWLPKAEIGIFHSFHADKNELSNDPFFHSRMAKLVDFIGYAANPNEQINLA
KLQEEIKHNHDEFIQRRTLLILAQLHRHNINASLYLASWNTLTGDTRHTNGRFFRGALLI
RALLKLPPQVSTVGFWINSEIQHEALSATYIDIRSLALFYISNTRRPIYHVLRLNARLRG
NIMSQSEHYLLTQIENGYQLLLTNPVIFHPYLSMQEQIIQDLKIRLTFDFSGLKNGSYQV
KKWIFDQQHGALYREFERQQTSYGRDDEIMQAIERQAMPYLCVNDIDIINSWSISDELDI
NAIHFYELKEILQ

Enzyme Prediction     

No EC number prediction in MGYG000002508_02574.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3664	XynB	3.53e-44	356	791	1	427	Beta-xylosidase [Carbohydrate transport and metabolism].
COG2207	AraC	7.09e-21	162	277	12	127	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
COG4977	GlxA	5.81e-20	169	275	219	325	Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].
smart00342	HTH_ARAC	2.05e-19	186	269	1	84	helix_turn_helix, arabinose operon control protein.
pfam12833	HTH_18	1.30e-15	192	270	1	80	Helix-turn-helix domain.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QIQ21111.1	3.81e-191	6	793	4	787
QPJ25835.1	1.71e-136	9	792	4	780
QOF64550.1	2.60e-135	7	789	2	777
QOF56795.1	2.60e-135	7	789	2	777
QOF62367.1	3.06e-133	9	789	4	777

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6SWI_A	5.34e-12	177	279	12	115	TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q6GD21	3.33e-62	11	789	4	740	Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q8NYT6	3.33e-62	11	789	4	740	Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q7A882	2.20e-61	11	789	4	740	Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q99XB1	2.20e-61	11	789	4	740	Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1
Q6GKK1	4.13e-61	11	789	4	740	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000017	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002508_02574.