CAZyme Information: MGYG000002511_02078

Basic Information

• Species: Klebsiella variicola
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella variicola
• CAZyme ID: MGYG000002511_02078
• CAZy Family: GH0
• CAZyme Description: HTH-type transcriptional activator RhaR

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
777	MGYG000002511_4|CGC3	89338.47	9.5432

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002511	5624300	Isolate	Australia	Oceania

• Gene Location: Start: 325851; End: 328184 Strand: -

Full Sequence      

MEQHSGDFSVTVRDVRQLNQTEGDLLTLLWVLEGSVNLTEAEGVPQPLAADELAIVNRNR
RWSLRSAGTNAVMILTLSASWLTRLDSAFFAVDYQITPRTRDAEDGLRRLMRQLLVSGLV
KHPGHYRLEANRWLSEIALLLATRFSQPIASTPRRGAENWSRRIASVVARIDANYQRRLS
LQEVAAAEFVSEAWLSRLFHKEVGVSFVQYLTALRLRHAADQLLTTRKPAQQIAREQGFA
STRMMSDLFKRQHGVTPRQYREQHPRELARPRPPQADRWQLVAVDRLYARLNEPEPRDRE
SPPLPINPPQTREINLHDRPARAAVLRHTRMVVTVRELDDLLREDVRRELEQLHRALPVY
AIDINDPFLSSRLFGTGWDDPQMAGYACWYNLQQIFSWLAAMGWNVILHTGVTTRSDLLQ
RFLLLAANHFPPATLNSWRFVWHWSPQASEATRQAAWRQQREVLHRLLPQPQLGIWHRFA
PSDPGNDPLFHSPLLAEADFLACQADANEQLDLAQADSSRLASSEHYPLHKLRQIHSALR
QRQLNLPLWLLSWNTLTGDTRDTNGRFFRGALLMDNLLGVADQVWLAGFWLNSGLQGEAR
ANGKLDTSSLALHYLHGLPRPVYWVLWLWRRLRGEILFQDKNLLLLHHQGHYQLLLRNTV
VYNPWLSSEAAFIQRFSQPYSVRLQGLEGGWRVKQHLFDQHHGALFPLVDAFRSRSGPDA
EDYQWLMHRARPALSVEDARLDGHWLRVDSLESNALALYEFTPQRAPGEDPAPASNP

Enzyme Prediction     

No EC number prediction in MGYG000002511_02078.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3664	XynB	2.32e-24	415	763	83	426	Beta-xylosidase [Carbohydrate transport and metabolism].
COG2207	AraC	3.31e-23	161	266	19	124	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342	HTH_ARAC	1.15e-22	178	261	1	84	helix_turn_helix, arabinose operon control protein.
COG4977	GlxA	1.22e-20	146	263	206	321	Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].
pfam12833	HTH_18	1.71e-19	184	263	1	81	Helix-turn-helix domain.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QXO00589.1	0.0	1	777	1	777
QTH74028.1	0.0	1	777	1	777
QNP22809.1	0.0	1	777	1	777
QFY23155.1	0.0	1	777	1	777
QQM83895.1	0.0	1	777	1	777

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6SWI_A	2.81e-12	176	261	20	105	TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
3LSG_A	7.43e-06	190	262	31	103	Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]
3OIO_A	9.35e-06	163	263	8	108	Crystalstructure of transcriptional regulator (AraC-type DNA-binding domain-containing proteins) from Chromobacterium violaceum [Chromobacterium violaceum]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q5HJR8	1.13e-36	11	738	13	716	Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q6GKK1	2.01e-36	7	738	4	716	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q6GD21	4.77e-36	26	738	23	716	Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q8NYT6	4.77e-36	26	738	23	716	Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q936F1	4.77e-36	11	738	13	716	Uncharacterized HTH-type transcriptional regulator OS=Staphylococcus aureus OX=1280 PE=4 SV=2

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000040	0.000001	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002511_02078.