CAZyme Information: MGYG000002520_03038

Basic Information

• Species: Pluralibacter gergoviae
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Pluralibacter; Pluralibacter gergoviae
• CAZyme ID: MGYG000002520_03038
• CAZy Family: GH0
• CAZyme Description: HTH-type transcriptional activator RhaR

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
780	MGYG000002520_1|CGC42	89190.62	8.8754

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002520	5408082	Isolate	United States	North America

• Gene Location: Start: 3288055; End: 3290397 Strand: -

Full Sequence      

MAQSDSEFSVDVGEIISLSEEGKSALTLLWVLEGTQTLEVEGESRRLDQNALHIINGHQR
WTLSGSPDNVTLRLVLSAAWLCQLYPEFFGHAYAVPDESDGRLPHCDALRHLLHQLLAGT
LLNHSPRYRLEATRWISEILLLLTGRFQQPPALRVRQQNPGWSRRISHVVERINAGYTRR
ITLAEIARAEFVSEPWLSRLFHKEVGISFMQYITRLRLEKAAAALRSSNQPLHQIAQAHG
FASTRMMSDLFRRHYAMTPGKFRRQKPPAENIARPRGKRENLRPVAPDRLFHLLNTPEPQ
GWENYANTLNQVHERRIELDHLSGQGVRLARSGVVVTLRELDDLLRGDVRRDLDALRAEI
SISGIDIAEPFLSSRLFAHGWDDPQMMGYASWYNLHQIFTWLAERELSVLLHTSQTTRSD
LLQRFIECACGHFPPTVTRQWDFVFHWSPQAEDAPRQAAWQSQRAMLKNMLPGSRVGIWH
RFAPDAFSEKDVALLRQLPRLQADFLACSADSNELLNFAQLRHAHLAAAENYPVKRVEQI
QNALREEGRPLPLWLLSWNTLTGETRTTNGSFFRGALLMQNLLGLSTKVAVTGFWLNSSL
QGETRSSGTIDTSSLALQYNHGLPRPIFWVLWLWQRLRGEIILQDRHLLFLRHQRGYQLL
VHNAAIFNPWLSGEEAFLQRFRQQYLIRIAGIQGRWRVKSHLFDLRNGALFPLLQAFQAQ
SGPDEEVLNWVFHKARPTLSVHDEQLQAGWQASGALESNALMLYELTPVAQSAEIASTSC

Enzyme Prediction     

No EC number prediction in MGYG000002520_03038.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3664	XynB	8.16e-30	418	770	83	428	Beta-xylosidase [Carbohydrate transport and metabolism].
smart00342	HTH_ARAC	5.02e-25	180	263	1	84	helix_turn_helix, arabinose operon control protein.
COG2207	AraC	3.11e-23	163	265	19	121	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
pfam12833	HTH_18	5.56e-20	186	265	1	81	Helix-turn-helix domain.
COG4977	GlxA	5.76e-17	127	265	182	321	Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QKN82148.1	0.0	1	769	1	770
QGU12072.1	0.0	1	769	1	769
QHI56550.1	0.0	1	769	1	770
QGW18391.1	0.0	6	769	6	769
QMV77404.1	0.0	1	769	1	770

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6SWI_A	7.15e-12	181	264	23	106	TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
3LSG_A	5.46e-06	173	263	11	102	Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q6GKK1	1.10e-39	24	743	21	716	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q8NYT6	2.63e-39	24	743	21	716	Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q6GD21	2.63e-39	24	743	21	716	Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q5HJR8	3.52e-39	24	743	21	716	Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q7A882	3.52e-39	24	743	21	716	Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000049	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002520_03038.