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CAZyme Information: MGYG000002524_03407

You are here: Home > Sequence: MGYG000002524_03407

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia bercovieri
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia bercovieri
CAZyme ID MGYG000002524_03407
CAZy Family PL2
CAZyme Description Pectate disaccharide-lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
572 MGYG000002524_27|CGC1 64284.45 6.9314
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002524 4273500 Isolate Finland Europe
Gene Location Start: 30135;  End: 31853  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL2 28 558 0 0.998109640831758

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam06917 Pectate_lyase_2 0.0 21 572 5 556
Periplasmic pectate lyase. This family consists of several Enterobacterial periplasmic pectate lyase proteins (EC:4.2.2.2). A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QDW35247.1 0.0 1 572 1 572
QKJ06606.1 0.0 1 572 1 572
AKP33757.1 0.0 1 572 1 572
QKJ02404.1 0.0 1 572 1 572
QKJ10895.1 0.0 1 572 1 572

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2V8I_A 0.0 27 569 1 543
Structureof a Family 2 Pectate Lyase in a Native Form [Yersinia enterocolitica],2V8K_A Structure of a Family 2 Pectate Lyase in Complex with Trigalacturonic Acid [Yersinia enterocolitica]
2V8J_A 0.0 28 562 1 535
Structureof a Family 2 Pectate Lyase in Complex with a Transition Metal [Yersinia enterocolitica]
6OJK_A 0.0 18 572 15 572
Structureof YePL2A K291W in Complex with Tetragalacturonic Acid [Yersinia enterocolitica]
6OJL_A 0.0 18 572 15 572
Structureof YePL2A R194K in Complex with Pentagalacturonic Acid [Yersinia enterocolitica]
5A29_A 1.04e-140 25 541 29 553
Family2 Pectate Lyase from Vibrio vulnificus [Vibrio vulnificus YJ016]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P11278 0.0 1 572 1 572
Periplasmic pectate lyase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=pelY PE=3 SV=2
P14005 0.0 1 572 1 568
Periplasmic pectate lyase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pelB PE=3 SV=1
Q05526 9.16e-113 52 550 39 529
Pectate disaccharide-lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelW PE=2 SV=3

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000278 0.998965 0.000190 0.000200 0.000183 0.000160

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002524_03407.