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CAZyme Information: MGYG000002525_00010
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Yersinia intermedia | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia intermedia | |||||||||||
| CAZyme ID | MGYG000002525_00010 | |||||||||||
| CAZy Family | GH105 | |||||||||||
| CAZyme Description | Unsaturated rhamnogalacturonyl hydrolase YesR | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 10150; End: 11289 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH105 | 60 | 375 | 5.6e-115 | 0.9668674698795181 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG4225 | YesR | 7.09e-125 | 31 | 379 | 4 | 354 | Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism]. |
| pfam07470 | Glyco_hydro_88 | 4.25e-115 | 37 | 375 | 1 | 340 | Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases. |
| pfam07944 | Glyco_hydro_127 | 0.002 | 23 | 142 | 78 | 206 | Beta-L-arabinofuranosidase, GH127. One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, has been characterized as an unusual beta-L-arabinofuranosidase enzyme, EC:3.2.1.185. It rleases l-arabinose from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide and also transglycosylates 1-alkanols with retention of the anomeric configuration. Terminal beta-l-arabinofuranosyl residues have been found in arabinogalactan proteins from a mumber of different plantt species. beta-l-Arabinofuranosyl linkages with 1-4 arabinofuranosides are also found in the sugar chains of extensin and solanaceous lectins, hydroxyproline (Hyp)2-rich glycoproteins that are widely observed in plant cell wall fractions. The critical residue for catalytic activity is Glu-338, in a ET/SCAS sequence context. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AJJ20360.1 | 1.36e-290 | 1 | 379 | 1 | 379 |
| QGR66947.1 | 1.36e-290 | 1 | 379 | 1 | 379 |
| AVL34241.1 | 1.36e-290 | 1 | 379 | 1 | 379 |
| VDZ52945.1 | 1.36e-290 | 1 | 379 | 1 | 379 |
| ARB84464.1 | 1.36e-290 | 1 | 379 | 1 | 379 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3PMM_A | 1.55e-211 | 3 | 378 | 6 | 381 | ChainA, Putative cytoplasmic protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] |
| 3QWT_A | 3.02e-211 | 3 | 378 | 5 | 380 | ChainA, Putative GH105 family protein [Salmonella enterica subsp. enterica serovar Paratyphi A],3QWT_B Chain B, Putative GH105 family protein [Salmonella enterica subsp. enterica serovar Paratyphi A],3QWT_C Chain C, Putative GH105 family protein [Salmonella enterica subsp. enterica serovar Paratyphi A],3QWT_D Chain D, Putative GH105 family protein [Salmonella enterica subsp. enterica serovar Paratyphi A] |
| 4XUV_A | 1.87e-141 | 23 | 374 | 7 | 368 | Crystalstructure of a glycoside hydrolase family 105 (GH105) enzyme from Thielavia terrestris [Thermothielavioides terrestris NRRL 8126],4XUV_B Crystal structure of a glycoside hydrolase family 105 (GH105) enzyme from Thielavia terrestris [Thermothielavioides terrestris NRRL 8126] |
| 3K11_A | 6.09e-17 | 164 | 355 | 199 | 392 | Crystalstructure of Putative glycosyl hydrolase (NP_813087.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.80 A resolution [Bacteroides thetaiotaomicron VPI-5482] |
| 1NC5_A | 9.93e-17 | 63 | 352 | 39 | 341 | Structureof Protein of Unknown Function of YteR from Bacillus Subtilis [Bacillus subtilis],2D8L_A Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc [Bacillus subtilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| O31521 | 2.40e-51 | 63 | 375 | 29 | 336 | Unsaturated rhamnogalacturonyl hydrolase YesR OS=Bacillus subtilis (strain 168) OX=224308 GN=yesR PE=1 SV=1 |
| O34559 | 5.44e-16 | 63 | 352 | 39 | 341 | Unsaturated rhamnogalacturonyl hydrolase YteR OS=Bacillus subtilis (strain 168) OX=224308 GN=yteR PE=1 SV=1 |
| P9WF04 | 1.48e-11 | 165 | 375 | 201 | 409 | Unsaturated 3S-rhamnoglycuronyl hydrolase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_28 PE=1 SV=1 |
| P0A3U6 | 6.81e-09 | 180 | 314 | 10 | 150 | Protein Atu3128 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=Atu3128 PE=3 SV=1 |
| P0A3U7 | 6.81e-09 | 180 | 314 | 10 | 150 | 24.9 kDa protein in picA locus OS=Rhizobium radiobacter OX=358 PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000054 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |