You are browsing environment: HUMAN GUT
CAZyme Information: MGYG000002525_03431
You are here: Home > Sequence: MGYG000002525_03431
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Yersinia intermedia | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia intermedia | |||||||||||
| CAZyme ID | MGYG000002525_03431 | |||||||||||
| CAZy Family | PL2 | |||||||||||
| CAZyme Description | Pectate disaccharide-lyase | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | Start: 183397; End: 185115 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL2 | 28 | 558 | 0 | 0.998109640831758 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam06917 | Pectate_lyase_2 | 0.0 | 21 | 572 | 5 | 556 | Periplasmic pectate lyase. This family consists of several Enterobacterial periplasmic pectate lyase proteins (EC:4.2.2.2). A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls. |
| cd20426 | Tudor_TDRD6_rpt7 | 0.004 | 473 | 539 | 64 | 121 | seventh Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins. TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the seventh one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AVL36824.1 | 0.0 | 1 | 572 | 1 | 572 |
| ARB83074.1 | 0.0 | 1 | 572 | 1 | 572 |
| QGR68463.1 | 0.0 | 1 | 572 | 1 | 572 |
| AJJ21333.1 | 0.0 | 1 | 572 | 1 | 572 |
| QGR69465.1 | 0.0 | 1 | 572 | 1 | 572 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2V8I_A | 0.0 | 27 | 569 | 1 | 543 | Structureof a Family 2 Pectate Lyase in a Native Form [Yersinia enterocolitica],2V8K_A Structure of a Family 2 Pectate Lyase in Complex with Trigalacturonic Acid [Yersinia enterocolitica] |
| 2V8J_A | 0.0 | 28 | 562 | 1 | 535 | Structureof a Family 2 Pectate Lyase in Complex with a Transition Metal [Yersinia enterocolitica] |
| 6OJK_A | 0.0 | 23 | 572 | 23 | 572 | Structureof YePL2A K291W in Complex with Tetragalacturonic Acid [Yersinia enterocolitica] |
| 6OJL_A | 0.0 | 23 | 572 | 23 | 572 | Structureof YePL2A R194K in Complex with Pentagalacturonic Acid [Yersinia enterocolitica] |
| 5A29_A | 2.61e-141 | 25 | 541 | 29 | 553 | Family2 Pectate Lyase from Vibrio vulnificus [Vibrio vulnificus YJ016] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P11278 | 0.0 | 1 | 572 | 1 | 572 | Periplasmic pectate lyase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=pelY PE=3 SV=2 |
| P14005 | 0.0 | 9 | 572 | 5 | 568 | Periplasmic pectate lyase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pelB PE=3 SV=1 |
| Q05526 | 8.25e-114 | 52 | 550 | 39 | 529 | Pectate disaccharide-lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelW PE=2 SV=3 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000264 | 0.998976 | 0.000190 | 0.000188 | 0.000178 | 0.000156 |