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CAZyme Information: MGYG000002525_04027

You are here: Home > Sequence: MGYG000002525_04027

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia intermedia
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia intermedia
CAZyme ID MGYG000002525_04027
CAZy Family PL22
CAZyme Description Oligogalacturonate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
388 MGYG000002525_18|CGC2 44207.53 5.0252
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002525 5023222 Isolate Finland Europe
Gene Location Start: 51016;  End: 52182  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.6

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL22 215 383 5.9e-83 0.6339622641509434
PL22 32 147 6.1e-31 0.42641509433962266

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam14583 Pectate_lyase22 0.0 1 386 1 386
Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
COG0823 TolB 2.11e-74 1 387 58 425
Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport].
PRK05137 tolB 1.06e-08 197 378 162 317
Tol-Pal system protein TolB.
PRK00178 tolB 2.82e-08 245 383 206 319
Tol-Pal system protein TolB.
PRK04792 tolB 6.35e-08 245 382 225 337
Tol-Pal system protein TolB.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AVL34716.1 8.05e-308 1 388 1 388
ARB84924.1 8.05e-308 1 388 1 388
AJJ18206.1 8.05e-308 1 388 1 388
QGR66561.1 1.14e-307 1 388 1 388
VDZ54247.1 1.14e-307 1 388 1 388

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3PE7_A 1.19e-299 1 388 1 388
Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081]
3C5M_A 1.92e-206 2 385 2 385
Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P21258 2.18e-256 1 388 1 388
Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2
Q59418 4.40e-256 1 387 1 387
Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000031 0.000011 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002525_04027.