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CAZyme Information: MGYG000002533_03271
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Vibrio vulnificus | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Vibrionaceae; Vibrio; Vibrio vulnificus | |||||||||||
| CAZyme ID | MGYG000002533_03271 | |||||||||||
| CAZy Family | PL2 | |||||||||||
| CAZyme Description | Pectate disaccharide-lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 140155; End: 141855 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL2 | 29 | 562 | 2.3e-246 | 0.9962546816479401 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam06917 | Pectate_lyase_2 | 3.94e-128 | 28 | 549 | 12 | 525 | Periplasmic pectate lyase. This family consists of several Enterobacterial periplasmic pectate lyase proteins (EC:4.2.2.2). A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AIL73345.1 | 0.0 | 1 | 566 | 1 | 566 |
| QMV39062.1 | 0.0 | 1 | 566 | 1 | 566 |
| ALM73723.1 | 0.0 | 1 | 566 | 1 | 566 |
| ANH66085.1 | 0.0 | 1 | 566 | 1 | 566 |
| AMG10354.1 | 0.0 | 1 | 566 | 1 | 566 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5A29_A | 0.0 | 11 | 566 | 15 | 570 | Family2 Pectate Lyase from Vibrio vulnificus [Vibrio vulnificus YJ016] |
| 6OJL_A | 2.28e-141 | 25 | 549 | 25 | 541 | Structureof YePL2A R194K in Complex with Pentagalacturonic Acid [Yersinia enterocolitica] |
| 6OJK_A | 1.28e-140 | 25 | 549 | 25 | 541 | Structureof YePL2A K291W in Complex with Tetragalacturonic Acid [Yersinia enterocolitica] |
| 2V8J_A | 2.26e-140 | 28 | 549 | 1 | 514 | Structureof a Family 2 Pectate Lyase in Complex with a Transition Metal [Yersinia enterocolitica] |
| 2V8I_A | 2.92e-140 | 28 | 549 | 2 | 515 | Structureof a Family 2 Pectate Lyase in a Native Form [Yersinia enterocolitica],2V8K_A Structure of a Family 2 Pectate Lyase in Complex with Trigalacturonic Acid [Yersinia enterocolitica] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P11278 | 1.99e-139 | 1 | 549 | 8 | 541 | Periplasmic pectate lyase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=pelY PE=3 SV=2 |
| Q05526 | 5.09e-138 | 29 | 564 | 19 | 539 | Pectate disaccharide-lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelW PE=2 SV=3 |
| P14005 | 4.98e-127 | 28 | 549 | 24 | 537 | Periplasmic pectate lyase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pelB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000371 | 0.998847 | 0.000238 | 0.000184 | 0.000167 | 0.000159 |