CAZyme Information: MGYG000002535_02489

Basic Information

• Species: Citrobacter gillenii
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter gillenii
• CAZyme ID: MGYG000002535_02489
• CAZy Family: GH105
• CAZyme Description: Unsaturated rhamnogalacturonyl hydrolase YesR

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
379	MGYG000002535_1|CGC28	43739.81	5.373

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002535	4885099	Isolate	United States	North America

• Gene Location: Start: 2549894; End: 2551033 Strand: -

Full Sequence      

MIVYPVKHSPLLRQPEHFIARDELKTLIKKVTHNLVNIHDESGEFLLRLDDGRVIDTKGW
AGWEWTHGVGLYGMYQYYQQTGDETMRDIIDGWFADRFAEGATTKNVNTMAPFLTLAYRY
EETRNPAYLPWLDSWAEWAMHDMPRTDFGGMQHITLAEENHQQMWDDTLMMTVLPLAKIG
KLLNRPEYVEEATYQFLLHVQNLMDKETCLWFHGWSYEGNHNFANARWARGNSWLTIVIP
EFLELVDLPENNAVRRYLVQVLNAQIAALATCQDESGLWHTLLDDPHSYLEASATAGFAY
GILKAVRKRYVGQEYAAVAELAIKGIVQHISPEGELLQTSFGTGMGHNLEFYRNIPLTSM
PYGQAMAMLCLTEYLRKYF

Enzyme Prediction     

No EC number prediction in MGYG000002535_02489.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH105	60	376	2.2e-115	0.9698795180722891

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG4225	YesR	3.24e-144	29	379	2	354	Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism].
pfam07470	Glyco_hydro_88	3.42e-128	37	378	1	343	Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ATF49936.1	4.06e-292	1	379	1	379
QCA18885.1	2.25e-289	1	379	1	379
QMR47486.1	2.25e-289	1	379	1	379
QNM25919.1	6.11e-278	1	379	1	379
AUV44118.1	6.11e-278	1	379	1	379

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3QWT_A	5.02e-256	3	379	5	381	ChainA, Putative GH105 family protein [Salmonella enterica subsp. enterica serovar Paratyphi A],3QWT_B Chain B, Putative GH105 family protein [Salmonella enterica subsp. enterica serovar Paratyphi A],3QWT_C Chain C, Putative GH105 family protein [Salmonella enterica subsp. enterica serovar Paratyphi A],3QWT_D Chain D, Putative GH105 family protein [Salmonella enterica subsp. enterica serovar Paratyphi A]
3PMM_A	3.82e-242	3	379	6	382	ChainA, Putative cytoplasmic protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
4XUV_A	8.81e-157	23	378	7	372	Crystalstructure of a glycoside hydrolase family 105 (GH105) enzyme from Thielavia terrestris [Thermothielavioides terrestris NRRL 8126],4XUV_B Crystal structure of a glycoside hydrolase family 105 (GH105) enzyme from Thielavia terrestris [Thermothielavioides terrestris NRRL 8126]
3K11_A	3.14e-18	187	357	224	392	Crystalstructure of Putative glycosyl hydrolase (NP_813087.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.80 A resolution [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O31521	1.84e-50	63	376	29	337	Unsaturated rhamnogalacturonyl hydrolase YesR OS=Bacillus subtilis (strain 168) OX=224308 GN=yesR PE=1 SV=1
P0A3U6	1.52e-09	180	319	10	155	Protein Atu3128 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=Atu3128 PE=3 SV=1
P0A3U7	1.52e-09	180	319	10	155	24.9 kDa protein in picA locus OS=Rhizobium radiobacter OX=358 PE=2 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000063	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002535_02489.