CAZyme Information: MGYG000002540_01798

Basic Information

• Species: Paraprevotella clara
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Paraprevotella; Paraprevotella clara
• CAZyme ID: MGYG000002540_01798
• CAZy Family: CBM50
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
583		66197.47	9.1498

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002540	4187245	Isolate	not provided	not provided

• Gene Location: Start: 69698; End: 71449 Strand: -

Full Sequence      

MAHWKRFIYVVIALFSLQLTARAQETETFVHTIKQGETVYSIARTYQVSPESILKLNPTA
STGIKAGETLTIPQQQNGTQEKRFHTIQAGETLYKLTKTYQVSADDICKANPGLTAENFK
AGMVIRIPASTTPVNTTPVKETAQPQGVAQSGCREMHKVKRKETLYSIARDFNLTEAELK
AANPEMNEPGYKLRKGDFVCIPFPKPEKPKEIIPTNEELMGKKAVSAPQKLIRMGVILPF
KGGSADNDKMIEFYRGVLMAVEEIKKSGTSVDVFAYDSGKSAGDIKAVVNSHPITNLDFI
IGPLYPEQIAPLSKFCQQHHIKLVVPFSSLGDNVYENPYYYAINPPKSYQFAEASRLTTE
LFGKDNVIFLEGTENDKDAAAFIDATRKRLQQNGSKANRLKLNDDEIKWMEAMTQYKDNV
IIPNSSGIKLLNQLFPKLKEFTKKNPEYRIKLVGYPEWQTYASNHLENFYQFNTYAYSSF
FRNPLNGNADEFENAYQKAFHTPTLVSWPRFGMLGFDTAIYFLKGISTYGEAFDQHLSQI
ITTSYQHRFDFQRISNWSGFINREVEFIHYSPSHSIELIRLKK

Enzyme Prediction     

No EC number prediction in MGYG000002540_01798.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam01476	LysM	1.87e-09	31	73	1	43	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
cd00118	LysM	2.92e-09	30	72	2	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
cd00118	LysM	3.38e-09	83	127	1	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
cd06268	PBP1_ABC_transporter_LIVBP-like	5.34e-09	235	523	3	287	periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
PRK06347	PRK06347	8.96e-09	26	183	403	576	1,4-beta-N-acetylmuramoylhydrolase.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ALA74972.1	2.46e-160	6	581	5	599
QJR68229.1	3.48e-160	6	581	5	599
QJR60047.1	3.48e-160	6	581	5	599
AII69224.1	3.48e-160	6	581	5	599
QJR72564.1	3.48e-160	6	581	5	599

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P54421	7.36e-07	33	183	30	177	Probable peptidoglycan endopeptidase LytE OS=Bacillus subtilis (strain 168) OX=224308 GN=lytE PE=1 SV=1
Q5HRU2	1.65e-06	5	194	3	189	N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=sle1 PE=3 SV=1
Q8CMN2	1.65e-06	5	194	3	189	N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=sle1 PE=3 SV=1
Q37896	2.66e-06	20	127	154	262	Endolysin OS=Bacillus phage B103 OX=10778 GN=15 PE=3 SV=1
O31852	2.97e-06	20	183	79	253	D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS OS=Bacillus subtilis (strain 168) OX=224308 GN=cwlS PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000247	0.999062	0.000209	0.000153	0.000154	0.000141

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002540_01798.