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CAZyme Information: MGYG000002540_02714

You are here: Home > Sequence: MGYG000002540_02714

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paraprevotella clara
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Paraprevotella; Paraprevotella clara
CAZyme ID MGYG000002540_02714
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
486 MGYG000002540_47|CGC1 54646.9 5.5656
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002540 4187245 Isolate not provided not provided
Gene Location Start: 62690;  End: 64150  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002540_02714.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 231 469 1.8e-39 0.6553846153846153

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 7.10e-10 230 366 237 371
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02218 PLN02218 6.75e-08 239 471 200 416
polygalacturonase ADPG
PLN02793 PLN02793 1.78e-04 238 461 184 392
Probable polygalacturonase
PLN03003 PLN03003 0.006 241 405 148 298
Probable polygalacturonase At3g15720
pfam00295 Glyco_hydro_28 0.008 211 431 88 274
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QJR77942.1 8.55e-169 18 486 19 464
AII64640.1 2.20e-168 18 486 16 461
QJR73778.1 4.89e-168 18 486 19 464
QJR69445.1 4.89e-168 18 486 19 464
QJR65182.1 4.89e-168 18 486 19 464

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 8.95e-10 208 478 166 433
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.037583 0.958528 0.002916 0.000317 0.000302 0.000315

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002540_02714.