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CAZyme Information: MGYG000002541_00028
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Cardiobacterium valvarum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium; Cardiobacterium valvarum | |||||||||||
| CAZyme ID | MGYG000002541_00028 | |||||||||||
| CAZy Family | GT19 | |||||||||||
| CAZyme Description | Lipid-A-disaccharide synthase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 5987; End: 7126 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT19 | 8 | 360 | 3.9e-127 | 0.9887005649717514 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00025 | lpxB | 1.80e-150 | 5 | 375 | 1 | 373 | lipid-A-disaccharide synthase; Reviewed |
| COG0763 | LpxB | 1.20e-127 | 8 | 345 | 4 | 346 | Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis]. |
| pfam02684 | LpxB | 1.87e-108 | 8 | 345 | 1 | 343 | Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. |
| TIGR00215 | lpxB | 6.56e-99 | 1 | 345 | 1 | 349 | lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| PRK01021 | lpxB | 1.45e-49 | 10 | 322 | 231 | 549 | lipid-A-disaccharide synthase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| VEG78181.1 | 8.88e-220 | 1 | 377 | 1 | 377 |
| ABQ13277.1 | 1.02e-122 | 7 | 373 | 7 | 377 |
| AXM45550.1 | 1.02e-122 | 7 | 373 | 7 | 377 |
| QSX77239.1 | 1.49e-113 | 6 | 378 | 32 | 413 |
| QGW64520.1 | 7.89e-113 | 6 | 378 | 14 | 395 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5W8N_A | 1.36e-88 | 6 | 375 | 7 | 379 | LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)] |
| 5W8S_A | 1.36e-88 | 6 | 375 | 7 | 379 | LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q4USP7 | 7.28e-105 | 7 | 375 | 45 | 419 | Lipid-A-disaccharide synthase OS=Xanthomonas campestris pv. campestris (strain 8004) OX=314565 GN=lpxB PE=3 SV=2 |
| Q8PAW6 | 7.28e-105 | 7 | 375 | 45 | 419 | Lipid-A-disaccharide synthase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=lpxB PE=3 SV=2 |
| Q8PML8 | 3.85e-102 | 7 | 373 | 46 | 418 | Lipid-A-disaccharide synthase OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=lpxB PE=3 SV=2 |
| Q3BVL7 | 3.85e-102 | 7 | 373 | 46 | 418 | Lipid-A-disaccharide synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) OX=316273 GN=lpxB PE=3 SV=1 |
| Q0VQE4 | 1.54e-101 | 8 | 375 | 10 | 379 | Lipid-A-disaccharide synthase OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) OX=393595 GN=lpxB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000064 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |