CAZyme Information: MGYG000002541_01709

Basic Information

• Species: Cardiobacterium valvarum
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium; Cardiobacterium valvarum
• CAZyme ID: MGYG000002541_01709
• CAZy Family: GH39
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1700		181202.59	4.819

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002541	2547857	Isolate	not provided	not provided

• Gene Location: Start: 109; End: 5211 Strand: +

Full Sequence      

MQYQWLRDGQPIGGQTGATYRLTTDDAGHKIAVRATYKDNAGYHENPLSEATATVADNPQ
PQPNNAGTVSITGEAKVGSELTANISDADGVPDTGVTYQWQRDGQPIANATGKTYTLTQD
DAGHKISVRATYKDNAGHDESPLSEAQTIAPQDASHLTVKETDGPIAGTMHIGSLADGEA
VTIGNTTLNLARLGNLAQQPQTVLDNDKGTLALTGYDRASGTLHYTYDPKEQPGFDNVRE
IIDVAIGREGFRGTNGIGVQPLNPAWGTNLAAAEESYARAAKLGVKWVRIVASWHRAQAA
ENGDYNWEDLDAAVKLAQKYGMKVLMQVSGTPEWASGADQLSAAEKEALDKRGYWVSNFA
PKPEHDADYAKFMAAVVKRYAPQGIKDYEVWNEPGNPGFWHDSPGNLKPNAAHYTNLLKL
AYKAAHDAAPDVNVLAGGMTVGETRSSDGYIDPRDFLEQMYAAGAKGHFDTLSHHPYGIT
SREFKSNGWALMNGDVVAPPPGEKTLKQIMQEHGDGDKKIWATEVGREAMYQGLDETQQA
TVIKTLLEQHAKTGEGPMILYQAQNDRAPYVPGIVSRDADGDGKPDVNIDTDGDGKPDAN
LDADGNGIPDALEKANRENYFGLWTHDGKEKPAVGVIRSAAGQTGGTKHSTLTVDILDNG
ANPPPVNHAPTDISLSTNKIAEGKDGAVVGRLTTTDPDVGDKHTYTVSDGRFEVTADGTL
KLKAGYHIDYATEKTVDLTITSTDSGGLSVRKRIYVFVQDDPDYPAPSPQPNQQGTVSIS
GEAKPGSTLTATVKDGDGFSADNVQYQWLRDGNPIANANGKTYTLTSDDAGHKITVRATY
KDNAGHDENPLSSPLDIDNGTPNHSPTAITLNAGDSASYWVKAGSGGATVGKLGVSDPDS
GDTHTYTVSDSRFEITADGTLKLKDGQSVHYGEEKRIQLTVTATDNHGAAYSRDIAVQVK
DEGNKGAASSLPAAPVHDPQAGITVPDAPNIARDDAQRGGITITPAHGADSLHLRYRDES
GRTHDIDLVKHNGRWQASDSSLSVDPQSGVITLAPGQVQDGSTVMAGNAARGIHADRVAT
LTADSDSGRIGVPTLAHDPAHSGGITLTPAADNDSLSMAYTDSNGIARTLSAAKENGEWR
ITAAGTSASIDPASGTITLPPESILDNSTVRASGGQKGAQSAETTLRSGADNPPLEAYLF
AASDAPVNEGDSAHYLIRLNRPAERDLTFNVRVSHKDTDAGDLDDSTQTVTIRAGESHAT
FRIDTRDDTNAERIETYKVSITSADGGATVPDWKASLTGEIRDNDGTIAAPSVREGADGT
TITPAAGARHIHITYQDNQFGSVTLNAWRDDNNRWHLSEVNPDKRTTAPSIDPDSGSVTL
PSSILAAGGRVHAHNNDSQNSGTGGRNSAVAEYDGWKLDWHDTFDKSVEESGWARYGWGW
QTPEHGGMGRYQQSNAYTADGVLNIQNQYHNGAWTSAGISSGDTFAASGGRWEIRARFSD
AKGIGYAFLLWPKSEKWPPEVDFAEGRARDPNIMGTYHWGTAADHQQDNQFLRNADLTDW
HTYGAIIDPDAGTITYTFDGKPWYTLKNVPATSEMMWLGMQTGSQDPNGSAAQSESIDNA
IPGAHTPAASNIQIDWAAHYRKDNSDTHTAADHAQHDGATDNAPHTLGDTDAPVHLSAPL
KASAQAELADKGSANPQLPR

Enzyme Prediction     

No EC number prediction in MGYG000002541_01709.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	295	485	1.3e-28	0.3990719257540603
GH16	1419	1638	1.4e-23	0.9841269841269841

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd00413	Glyco_hydrolase_16	1.92e-21	1422	1640	1	210	glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
cd08023	GH16_laminarinase_like	1.99e-21	1420	1597	1	195	Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
cd02182	GH16_Strep_laminarinase_like	8.87e-13	1415	1587	1	204	Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
COG2273	BglS	5.71e-09	1416	1620	41	257	Beta-glucanase, GH16 family [Carbohydrate transport and metabolism].
pfam00722	Glyco_hydro_16	1.18e-08	1451	1588	1	130	Glycosyl hydrolases family 16.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
VEG77521.1	0.0	1	1694	817	2632
VEG76548.1	2.11e-283	64	866	251	1055
QMT41733.1	2.97e-146	255	638	126	516
AMD96044.1	5.17e-145	256	638	3	386
ASQ47518.1	1.40e-141	256	638	307	690

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O33680	1.27e-08	1465	1566	294	396	Endo-1,3-1,4-beta-glycanase ExsH OS=Rhizobium meliloti (strain 1021) OX=266834 GN=exsH PE=1 SV=1
Q9Z3Q2	8.09e-07	1460	1566	280	396	Endo-1,3-1,4-beta-glycanase EglC OS=Rhizobium meliloti (strain 1021) OX=266834 GN=eglC PE=3 SV=2

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000052	0.000002	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002541_01709.